BAC Information

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BAC

Clone NameMSMg01-070M05
Chromosome2 (Build37)
Map Location 16,948,222 - 16,948,761
singlet/doubletsinglet
Overlap genenone
Upstream genePlxdc2, 4930515L03Rik, LOC383665
Downstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070M05.T7 (MSMg01no070_m05.b1)MSMg01-070M05.TJ (MSMg01no070_m05.g1)
ACCAG294707AG294708
length664679
length of high quality
(start - end)
548 (27 - 574)441 (75 - 515)
definitionCHROMAT_FILE: MSMg01no070_m05.b1 PHD_FILE: MSMg01no070_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:56 2005CHROMAT_FILE: MSMg01no070_m05.g1 PHD_FILE: MSMg01no070_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCTATACGACTCCTATTCTCAGAGGATCCGCGGAATTCTCTTATAAC
CCATAAGTTTCCACACAGTCCAGGCCATACTTTCTGTTGATTTGCATCAA
TCACTACAATCCATGTGCAAAGATGTAGATAGATTCCTGCCACAAAGTGG
TCAGAAAAATGACTTAGATGGAATGTTGCTGCAGAGTGGTCAGCACAATG
ATGTAGATAGGTACCATTGCTGATGGATCCCTGCTGCACAGCGGTCAACA
CAATGATCAATCACTGTGAAGCTGGATATATGACTGTTGCAAGGTACCTT
GTAGAGACAGAAGTACCATTTGGTTAATATATACACAGTAAAGGAAAGGG
ACCTTTGTAACTTTAAGGCAGGAGGAAACATCTTATTTTATTGGAAGGGT
GCAATGACCAGCAAGATATTTTGATTGAGTTCCCAAATAAATGCATGTTC
ATGTAAGTTGTATTTTCTGATGCCTAATAATTTTGTATTCAAATGTTCTA
ATTTGTAGATTAGATATATAAGTATCAGCAGAAGGTCTATTTTTTCTTTC
ACTCATTTTAACGGATTGTCTTGAAATTTCCTTTTCCAAATGGCTTGTAT
TACATCTAGGTGACCATGGTGTTAGGTTTTAAAAATGAGAGCCAAGAGAC
AGTTCATTGTTGGA
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCACAGTGGCTGCTTCTAATAGTTA
CTCCTCTTTCCCTGAGAGCTGCCTCTTTAGTCAAAGTCCTCGAGAGGAGG
GTAAATTGACTTAATTTTTTGCTCTTCATTTTTTATATTATCCTTTATAT
CTTTATATTATCCTTTGTATCTTTACATTTTATATTATCCTTTGTGTCTT
TATATTTTAGCTTCCTTTCTTTTTTTCTTTTTATATTTCTTAAGTTACTT
ATTTTTCTGCGCGCGTCTTCTTTTTCCTTTCTCTCTGTTTCTGATATGCC
TTCCTGGTACTCCTACAAAGTCGCTGCCCTTCCTTAACAGCTGGTCCCAC
ACAAACCCAGCAACAATTACCAGACCCACTGCGTAAGAAAGCATACCTCT
CAGAGACTTACCTTAATTTCTTTATACTTACTGGTACCACCGTTCCTCAG
CTGAAGAGTTCTGAATCCACGCAGTTGAATCCTTCTCAGCAGTCTGTTTT
GCAGGAACCTTTATTAACACCGCTCCCCCGCTGAAGAGTTCTGAATCCAC
GCCGGATCCTTCTCAGCAGTCTGTTTTACGGGAACCTTTAATAACCGCTC
CTTCCCCGTGATGCATTTCCGAATCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_m05.b1 MSMg01no070_m05.b1 CHROMAT_FILE:
MSMg01no070_m05.b1 PHD_FILE: MSMg01no070_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:56 2005
         (548 letters)



>mm_chr2_16948014_16948962
          Length = 949

 Score = 1015 bits (525), Expect = 0.0
 Identities = 536/543 (98%), Gaps = 7/543 (1%)
 Strand = Plus / Minus

                                                                       
Query: 9   ggaattctcttat----aacccataagtttccacacagtccaggccatactttctgttga 64
           |||||||||||||    ||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ggaattctcttataaaaaa---ataagtttccacacagtccaggccatactttctgttga 692

                                                                       
Query: 65  tttgcatcaatcactacaatccatgtgcaaagatgtagatagattcctgccacaaagtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tttgcatcaatcactacaatccatgtgcaaagatgtagatagattcctgccacaaagtgg 632

                                                                       
Query: 125 tcagaaaaatgacttagatggaatgttgctgcagagtggtcagcacaatgatgtagatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tcagaaaaatgacttagatggaatgttgctgcagagtggtcagcacaatgatgtagatag 572

                                                                       
Query: 185 gtaccattgctgatggatccctgctgcacagcggtcaacacaatgatcaatcactgtgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gtaccattgctgatggatccctgctgcacagcggtcaacacaatgatcaatcactgtgaa 512

                                                                       
Query: 245 gctggatatatgactgttgcaaggtaccttgtagagacagaagtaccatttggttaatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gctggatatatgactgttgcaaggtaccttgtagagacagaagtaccatttggttaatat 452

                                                                       
Query: 305 atacacagtaaaggaaagggacctttgtaactttaaggcaggaggaaacatcttatttta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atacacagtaaaggaaagggacctttgtaactttaaggcaggaggaaacatcttatttta 392

                                                                       
Query: 365 ttggaagggtgcaatgaccagcaagatattttgattgagttcccaaataaatgcatgttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttggaagggtgcaatgaccagcaagatattttgattgagttcccaaataaatgcatgttc 332

                                                                       
Query: 425 atgtaagttgtattttctgatgcctaataattttgtattcaaatgttctaatttgtagat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atgtaagttgtattttctgatgcctaataattttgtattcaaatgttctaatttgtagat 272

                                                                       
Query: 485 tagatatataagtatcagcagaaggtctattttttctttcactcattttaacggattgtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tagatatataagtatcagcagaaggtctattttttctttcactcattttaacggattgtc 212

              
Query: 545 ttg 547
           |||
Sbjct: 211 ttg 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 949
Length adjustment: 10
Effective length of query: 538
Effective length of database: 939
Effective search space:   505182
Effective search space used:   505182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)