BAC Information

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BAC

Clone NameMSMg01-071D14
Chromosome2 (Build37)
Map Location 44,165,378 - 44,165,619
singlet/doubletsinglet
Overlap geneArhgap15
Upstream geneLOC100041245, Kynu
Downstream geneGtdc1, Zeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071D14.T7 (MSMg01no071_d14.b1)MSMg01-071D14.TJ (MSMg01no071_d14.g1)
ACCAG295060AG295061
length700699
length of high quality
(start - end)
550 (44 - 593)244 (70 - 313)
definitionCHROMAT_FILE: MSMg01no071_d14.b1 PHD_FILE: MSMg01no071_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:33 2005CHROMAT_FILE: MSMg01no071_d14.g1 PHD_FILE: MSMg01no071_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATT
CTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGGACATAGTACTACCGGATGATCCA
GCAATACCTCTCCTGGGCATATATCCTGAAGATGTCCCAACTGGCAAGAA
GGACACATGCTCCCCTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA

ATGCAGTGGGAGGCCTGGCGGCCGCCTGGTTCCTACGTGGAGGTGAACTA
TAGAAGTACCAGAAGAATTCTAAAACCACACTCCATTGGAATGGGGACAA
TCAAAAGAAACATTCACCACTCTCCTGATCAAAAAAGTAACCATTTATAA
TCAGAGCTCACCACACAGTTAACACTGAGTCCAGCAGCAGCAAATTGGAT
TACTCCAAGAATTTTGGAGGTGAGGTAGCAAATGGACCCATGCTCATTCC
AGCTAAGCCCCTCCTCTCAGAGAGCGAAGACTCCGGGCAGCATTCAGCGC
TAATGAACTGGTTAGGTTCTGTTGTCGGTGAGGTGTTTGCCGTTACATAT
TGCACATAATGCACGGCCCTGTTAGAAGGGAAAAATTGGAGTCAAAGTGG
CTGGAAAGTTAGGTCTGCTCCGCAGCTCTGCGAGATTGTTGACATCTGCC
GAGGTTGGAGCGCTCAGTAAGCGGTAAATGGGGTGTCACTCTGAGTGGTA
GTTTACCATTATCCTGGCATCCTAATGAAGTGTCTGCAGTGCACAGAGCT
TCTGGATGGTATCTTAACGCACGGCTAGGCAAAAGCATTTCACTCCCTGT
CACTGTCATCCATCTGCCTGTACCCCATTGTAGCCAATGGGTTGTATTCA
TGTTACAATGTGCTATAAGCCATTTAGAGTTGCACATTGCATAATCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_d14.g1 MSMg01no071_d14.g1 CHROMAT_FILE:
MSMg01no071_d14.g1 PHD_FILE: MSMg01no071_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:33 2005
         (244 letters)



>mm_chr2_44165178_44165821
          Length = 644

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaaccacactccattggaatggggacaatcaaaagaaacattcaccactctcctgat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 201 ctaaaaccacactccattggaatggggacaatcaaaagaaacagtcacctctctcctgat 260

                                                                       
Query: 61  caaaaaagtaaccatttataatcagagctcaccacacagttaacactgagtccagcagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaaaagtaaccatttataatcagagctcaccacacagttaacactgagtccagcagca 320

                                                                       
Query: 121 gcaaattggattactccaagaattttggaggtgaggtagcaaatggacccatgctcattc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 321 gcaaattggattactccaagaattttggaggtgaggtagcaaatggacccatgctcaccc 380

                                                                       
Query: 181 cagctaagcccctcctctcagagagcgaagactccgggcagcattcagcgctaatgaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagctaagcccctcctctcagagagcgaagactccgggcagcattcagcgctaatgaact 440

             
Query: 241 gg 242
           ||
Sbjct: 441 gg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)