BAC Information

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BAC

Clone NameMSMg01-071L01
Chromosome2 (Build37)
Map Location 110,940,427 - 110,940,838
singlet/doubletsinglet
Overlap geneLOC668802
Upstream geneLOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071L01.T7 (MSMg01no071_l01.b1)MSMg01-071L01.TJ (MSMg01no071_l01.g1)
ACCAG295413AG295414
length735697
length of high quality
(start - end)
169 (69 - 237)415 (78 - 492)
definitionCHROMAT_FILE: MSMg01no071_l01.b1 PHD_FILE: MSMg01no071_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:11 2005CHROMAT_FILE: MSMg01no071_l01.g1 PHD_FILE: MSMg01no071_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTAAATATCCAATTTACAGCTGTTATACAAACAATGCAAATTT
CAATATATTCTTGGTTCCTTAAAAAAGGAAAAGGTAATAAAGCTAAACAC
ACACTGAAATAAAGGAAGAGAGAAATGAAGAAAGTAAGGAAGCAAAGCCA
GAAGGGGCTACAGAGGAGAGAGAGGGGGGAGGAAGGTAGGGAGACGGAGA
CTGAGACAGAGTGTCTAGGTGTGATTCTTATTTGTATTTTATTCCATAAG
TATCAAAGGTTATTACAACAAAGGTGAAGAAATGGACAAAGCATTGGTAA
CTACCAGACTGCTTTCTATTTTATACAGACAACTATTTTTTCTTAACCTT
TTCTTTCTTTGTCAGGTTTTACACAGACGTGTACACCATTTTAATTAGTA
TTCTAGCATGATTGTTCCCCGGCGCACTATCTTATTTGCCCTTTTTATTT
AGTATTTGTTTTTATCTCCCCCCCTTTATTCGCCCTTTCTCCCCTTTCTC
CCTTTCTCTTTTCTTTCTCCTCCCTTCCTATTCTCTTTTTCTCTTCCGCT
GTTCCCCCCCCCCCCCCTTTTCCCTTTTCTCCTTTTCTCCTCCCCTTTCT
CTTTTTGTACCCCCCCCCTCCCTTTCTTTTTTCTCTCTATCCTCCACTTT
CGTATCACCCTTCTTGTCTTCTTCTTTCATTTCTC
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTATTGGGATTGACTTTGACAG
GATAGTGTTATGCATCTTCCATCCAGGCATATTCCTCATTCATCAACAGG
AATAAGTCCAAGAGTCACAAATCCTCCTAAGGCAGGAGAAGGTAAGACTT
ATGTGTCATCAATAAGTCATTTGAAATATTGTTTATTAAAATCAGGTGAG
CCATATATTTTAATAGCCCAATAACTGCTTCTCAAATGTTTAGTGAGGGT
TAAGATGTATTCAATGGTAATTTATTATACAGCTCATGGACGTTAGTACC
ACTTTGGGTTGTTGGTCAAAAAGATTTGCATGACAAGTACATGGCAAAAT
ACTTCTGTTTGGGCAATTTCAAAATTAAAATTTTGAATAAAAATTTAGAA
GTGAAGAACAAAATTATAGTGTGCAGGTAGTTATATCAATCGATGAACAG
ATTATATTTTGTACTGTCCAGCGATAATTTTGATTGATATATTATTTGAA
AATTCCCTGAATTTCAGTTTGCCTTCAATTTTATATACCCATCCTAATTG
GTATCAGGTATATCATTTTTTCTTCTTATCATTGGTATTCCTTTCTCTCC
CTCAAATTTAAGATAGACCTTTGTCATTTTGAAAAAGGACCTTGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_l01.g1 MSMg01no071_l01.g1 CHROMAT_FILE:
MSMg01no071_l01.g1 PHD_FILE: MSMg01no071_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:11 2005
         (415 letters)



>mm_chr2_110940227_110941041
          Length = 815

 Score =  719 bits (372), Expect = 0.0
 Identities = 402/412 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actattgggattgactttgacaggatagtgttatgcatcttccatccaggcatattcctc 60
           |||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 612 actattggtattgactttgtcaggatagcgttatgcatcttccatccaggcatattcctc 553

                                                                       
Query: 61  attcatcaacaggaataagtccaagagtcacaaatcctcctaaggcaggagaaggtaaga 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 552 attcatcaacaggaataagtacaagagtcacaaatcctcctaaggcaggagaaggtaaga 493

                                                                       
Query: 121 cttatgtgtcatcaataagtcatttgaaatattgtttattaaaatcaggtgagccatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cttatgtgtcatcaataagtcatttgaaatattgtttattaaaatcaggtgagccatata 433

                                                                       
Query: 181 ttttaatagcccaataactgcttctcaaatgtttagtgagggttaagatgtattcaatgg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttttaatagcccaatagctgcttctcaaatgtttagtgagggttaagatgtattcaatgg 373

                                                                       
Query: 241 taatttattatacagctcatggacgttagtaccactttgggttgttggtcaaaaagattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 taatttattatacagctcatggacgttagtaccactttgggttgttggtcaaaaagattt 313

                                                                       
Query: 301 gcatgacaagtacatggcaaaatacttctgtttgggcaatttcaaaattaaaattttgaa 360
           ||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 312 gcatgacaagtacatggtaaaatacttctgtttggggaatttcaaaactaaaattttgaa 253

                                                               
Query: 361 taaaaatttagaagtgaagaacaaaattatagtgtgcaggtagttatatcaa 412
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 252 taaaaaattagaagtgaagaacaaaattatagtatgcaggtagttatatcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)