BAC Information

Click to search

BAC

Clone NameMSMg01-071L02
Chromosome2 (Build37)
Map Location 116,633,234 - 116,633,427
singlet/doubletsinglet
Overlap genenone
Upstream geneMrg1, G630016G05Rik, 2810405F15Rik, LOC433464
Downstream geneTmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071L02.T7 (MSMg01no071_l02.b1)MSMg01-071L02.TJ (MSMg01no071_l02.g1)
ACCAG295415AG295416
length713719
length of high quality
(start - end)
204 (44 - 247)71 (74 - 144)
definitionCHROMAT_FILE: MSMg01no071_l02.b1 PHD_FILE: MSMg01no071_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:11 2005CHROMAT_FILE: MSMg01no071_l02.g1 PHD_FILE: MSMg01no071_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCTTACATGGACTTTCCCTACTCTTGAAGGGAAACGACCTCGAACA
AAGGCATATTAAAAATAATGAGGGCAGCTAAGACTAACAGGAGGCTCCGA
TGTCATCCATATTCCTCCTTACTAATTTAGACAAGTGGCCAAATTAAATT
CAGTCTCCCATTCTGCCTTTTTTTTTCCTGGAAGCTGTAACAAGGCAGTC
TGGCTCACAGCTATTAACAGCCTTGCCTAGCCCCCTTTCCTAGCGATGGT
TATGGAATCCCATTGCCAGTCTATGTTTTACGTCTCAGGACATACTGAAT
ATAGAGCTGGCTTCTTCATCTAGCACACGACTCAGCATACAGAGGGTTTA
CACTATAAAATCTGTCCCCGCCTTGAGTGTTGTTGTTCTGTCTAGTGGTC
TTCCCGTTATGTCCACTTCGCCCTCTGACTCCAGTTGAGTTGTTTCCCGC
TTTTTGACCCTTACCGCTCCTAGATCCTCTCCCGTTGGATTATCTTGGCC
GCTTCTTGTGCCCCCCCCTGCTTTTTAACTGTCCCGTCCCACCCCTTTTT
TTTTGCCCACCTATCCCTACCCCCTACTTATTTCTTCGCTATCCGATCCC
GCATCTTTAACGCTATTTCCCATCCTTTCTCTCCCGCTTTTTGTTTGTCT
CCTCTTTTCTCCG
CAATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAAGAAAACTCAGCTGTGGATTTTGC
CTCTGCTTACTGCAACCTGCCTATAAAGAAATATTTGCATCATAATATTA
TCGGAAACATAGCAAACTTCATCATAAGGCGTCTTTATTCGAAAGAGCGA
TTTATTTTTAAAGAATACGGAGATGATACAACAGATGTACAATAAAAAGA
AATGGCATGCTTTATTCGTTCCCACTCTGCTTGCCCTGAGTCTGCTACAT
GATTCCGTTAAGCTCTGCTTATCTCTTAGCACTCCACTGATCACAGATAT
TATACTCCGCCGCTAATTTTTAATCGCTGCCAACCGCTATTCTCCCCTCA
GCCGATATTTCTTTGCCCCCGTCCTCAGCTCGTCCTGCTCTTGCTCCTCC
CCTTTTGATTGTTTCCCCCCCTTTTTCTCTTTTTCCCCTCCCCTACTTGT
TCCCTCTCCCCCCATAACCTTTTCCCTGTACCTATCTTATCTTCCCTTCC
ACCTTCGCTACAATTGTATCCCCAATCCCCTCCTTCAGCGCCCTTTTTCC
CCCCCCTTTCCCCCCCTTCTCTCACACTTCGCTTTTCTTTTACCGCCCCC
CCCCCCCCCCCTCCCGTTTTTTCTATTACCGCTGTTTCTATATTACCTTT
CTTCTAATCGGCCTTGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_l02.b1 MSMg01no071_l02.b1 CHROMAT_FILE:
MSMg01no071_l02.b1 PHD_FILE: MSMg01no071_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:11 2005
         (204 letters)



>mm_chr2_116633027_116633629
          Length = 603

 Score =  362 bits (187), Expect = e-104
 Identities = 193/195 (98%), Gaps = 1/195 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcttacatggactttccctactcttgaagggaaacgacctcgaacaaaggcatatt 67
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 401 gaattcttacatggactttccctactcttgaagggaaacgaccgcgaacaaaggcatatt 342

                                                                       
Query: 68  aaaaataatgagggcagctaagactaacaggaggctccgatgtcatccatattcctcctt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaaaataatgagggcagctaagactaacaggaggctccgatgtcatccatattcctcctt 282

                                                                       
Query: 128 actaatttagacaagtggccaaattaaattcagtctcccattctgcctttttttttcctg 187
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 281 actaatttagacaagtggccaaattaaattcagtctcccattctgcc-ttttttttcctg 223

                          
Query: 188 gaagctgtaacaagg 202
           |||||||||||||||
Sbjct: 222 gaagctgtaacaagg 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 603
Length adjustment: 8
Effective length of query: 196
Effective length of database: 595
Effective search space:   116620
Effective search space used:   116620
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)