Query= MSMg01no072_b24.b1 MSMg01no072_b24.b1 CHROMAT_FILE:
MSMg01no072_b24.b1 PHD_FILE: MSMg01no072_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:45 2005
(525 letters)
>mm_chr2_25761245_25762167
Length = 923
Score = 845 bits (437), Expect = 0.0
Identities = 497/525 (94%), Gaps = 14/525 (2%)
Strand = Plus / Plus
Query: 1 ggaattcactctgtagattacgctggcctcaaactcagaaatccgcctgcctctgcctcc 60
|||| |||||||||||| | |||||||| ||||||||||||| |||||||||||||||
Sbjct: 213 ggaactcactctgtagaccaggctggccttgaactcagaaatccccctgcctctgcctcc 272
Query: 61 caagtgctaggattaaaggcgtgcgccaccacgcccgtcccgaaagtgactgtttcttta 120
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 273 caagtgctaggattaaagg------------cgcccgtcccgaaagtgactgtttcttta 320
Query: 121 tggttcagtgatacagacataagggcaggatagcttctgagctgctcgactctaaatcgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tggttcagtgatacagacataagggcaggatagcttctgagctgctcgactctaaat--c 378
Query: 181 tgtcttagttctaggcccctccagtagttcttagtgtgttaccaagaggaaagtgtctgt 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtcttatttctaggcccctccagtagttcttagtgtgttaccaagaggaaagtgtctgt 438
Query: 241 tgcattcacatggtggaggcccatggcctcttgtttgctttgggcctatactctgtttca 300
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 439 tgcattcacatggtggaggcccatggcctcttgttagctttgggcctatactctatttca 498
Query: 301 tgttgcttgggcaatctgaaccctttgatgcctgccggcctgtctcacctcctcccttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 499 tgttgcttgggcaatctgaaccctttgatgcctgccggcctgtctcacctcctccctgta 558
Query: 361 caatgccaagctgtagactgagatcaggcacctccaactgaggtctgactccattcgaga 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cagtgccaagctgtagactgagatcaggcacctccaactgaggtctgactccattcgaga 618
Query: 421 aaaggggcattaggcatcatctgctgcctgtggcctcgaatctgggctagaaaatgcatg 480
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaaggggctttaggaatcatctgctgcctgtggcctcgaatctgggctagaaaatgcatg 678
Query: 481 tgcattaatacatgcatacacacctgtgcacacatgacttggacc 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgcattaatacatgcatacacacctgtgcacacatgacttggacc 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 923
Length adjustment: 10
Effective length of query: 515
Effective length of database: 913
Effective search space: 470195
Effective search space used: 470195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_b24.g1 MSMg01no072_b24.g1 CHROMAT_FILE:
MSMg01no072_b24.g1 PHD_FILE: MSMg01no072_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:45 2005
(518 letters)
>mm_chr2_25925752_25926669
Length = 918
Score = 948 bits (490), Expect = 0.0
Identities = 512/520 (98%), Gaps = 2/520 (0%)
Strand = Plus / Minus
Query: 1 ttcttctcctcatcgtccttctgagctcgtggttttagttactgctgtgttttatttcct 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcttctcctcatcgtccttctgaactcgtggttttagttactgctgtgttttatttcct 565
Query: 61 tattgattctggttttctttgagactcccagttttgtttcccttccctttccacactcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tattgattctggttttctttgagactcccagttttgtttcccttccctttccacactcac 505
Query: 121 agcagatgtaccatgtgtatctgctaacgatcagatcgaatgtctttttgtaaattgtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agcagatgtaccatgtgtatctgctaacgatcagatcgaatgtctttttgtaaattgtgc 445
Query: 181 ttttatcatctgatctgtgtctaatatctttgctgctgttttctggtctttgctggcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 ttttatcatctgatctgtgtctaatatctttgctgctgttttctggtctttcctggcata 385
Query: 241 gttctcttgactgctgggtattatttgacaacattttagaagctctccttggaactgctg 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttctcttgactgctgggtattacttgacaacattttagaagctctccttggaactgctg 325
Query: 301 ctcaagccctcccaggctgcagtgagaggccctgggtgggccagtgtaggctgttgtgag 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 ctcaagccctcccaggctgcagtgagaggccctgggtgggccagtgtaagctgttgtgag 265
Query: 361 ccccagcctcagccatggctgttttgggttacagctggaagccagaactgtcccgcagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccccagcctcagccatggctgttttgggttacagctggaagccagaactgtcccgcagac 205
Query: 421 tctg--acacacacacacacacacacacacccgacaagaaccaccaagctgtgtgttggc 478
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 204 tctgacacacacacacacacacacacacacccgacaagaaccagcaagctgtgtgttggc 145
Query: 479 tcttgtttttgagtcttgtcctgcatggctgctatttagt 518
|||||||||||||| |||||||||||||||||||||||||
Sbjct: 144 tcttgtttttgagttttgtcctgcatggctgctatttagt 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
