Query= MSMg01no072_d01.b1 MSMg01no072_d01.b1 CHROMAT_FILE:
MSMg01no072_d01.b1 PHD_FILE: MSMg01no072_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:50 2005
(600 letters)
>mm_chr2_3219877_3220876
Length = 1000
Score = 1060 bits (548), Expect = 0.0
Identities = 576/596 (96%), Gaps = 17/596 (2%)
Strand = Plus / Minus
Query: 5 gaattcaaaccctggggcccataggatagaaaatggaactgatttccctcaagttgtcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gaattcaaaccctggggcccataggatagaaaatggaactgatttccctcaagttgtcct 761
Query: 65 gaccttcacagggacattaatgtatgtgtgtatgtgctctcacacacatacacacatgca 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gaccttcacaggcacattaatgtatgtgtgtatgtgctctcacacacatacacacatgca 701
Query: 125 cagatgcaaaatttaacaaaaactcctaagtattaaaacattattgggtaagacattttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cagatgcaaaatttaacaaaaactcctaagtattaaaacattattgggtaagacattttt 641
Query: 185 gtttggaaccctttatactgctatattctggaaaagaaaaagaatacaaaagagagagac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gtttggaaccctttatactgctatattctggaaaagaaaaagaatacaaaagagagagac 581
Query: 245 acaggattaaaaattttcacttactgaggcttactctactataattttcctagaaggtaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 acaggattaaaaattttcacttactgaggcttactctactataattttcctagaaggtaa 521
Query: 305 attaaaatttaacacagaaattagcttctttttgcctatgtagggaaagtaatgaaagca 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 520 attaaaatttaacacagaaattagcttctttttgcctatgcagggaaagtaatgaaagca 461
Query: 365 aatggttctgctccactgttgtaaatcaatctgcccctgcttatttgctttcttagttta 424
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 460 aatggttctgctccactgttgtaaatcaatctgcccccgcttatttgctttcttagttta 401
Query: 425 tatctaattagcatatatactgtagtcttccaccaagactcagatctcattaatgcatac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tatctaattagcatatatactgtagtcttccaccaagactcagatctcattaatgcatac 341
Query: 485 tcacggccttaagatactgtttctcaaagacaataggttttctggttatttgcttacaaa 544
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 340 tcacggccttaagatactgt-----------------ttttctggttatttgcttacaaa 298
Query: 545 agtgtctttctaatcatattttcattttcataatattttctaacaaaaacacggtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agtgtctttctaatcatattttcattttcataatattttctaacaaaaacacggtc 242
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_d01.g1 MSMg01no072_d01.g1 CHROMAT_FILE:
MSMg01no072_d01.g1 PHD_FILE: MSMg01no072_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:50 2005
(487 letters)
>mm_chr2_3139294_3140180
Length = 887
Score = 926 bits (479), Expect = 0.0
Identities = 485/487 (99%)
Strand = Plus / Plus
Query: 1 cattctcttctggactcaggaagtatcatcaattccaaaacccagtaatcttccttggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattctcttctggactcaggaagtatcatcaattccaaaacccagtaatcttccttggat 260
Query: 61 tcatttagctctttaaaagatttgagccagacatgctggctcgtccaagctgtagtggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatttagctctttaaaagatttgagccagacatgctggctcgtccaagctgtagtggag 320
Query: 121 cagaggcagaagagttccgggaagttcaaggccaaccagtccagcccagtcttatagtga 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 cagaggcagaagagttccgggaagttcaaggccaaccaggccagcccagtcttatagtga 380
Query: 181 aaccccaggaaagaagagagaagggaacagggagaaagggagggagtgaaaatttgtctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccccaggaaagaagagagaagggaacagggagaaagggagggagtgaaaatttgtctc 440
Query: 241 cttaaaaaatatttctaaaaaagaaatctgtcattgaacatcaaaagcaaatttataata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttaaaaaatatttctaaaaaagaaatctgtcattgaacatcaaaagcaaatttataata 500
Query: 301 aagcaaatgggtacttgttaataaatagtatgaagccactgtgtcccatgtcctggacag 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 aagcaaatgggtacttgttaataaatagtatgaagccactgtgtcccatctcctggacag 560
Query: 361 tgcagggaactggacaagaataaatgtcattgagaggttttgttaccaatctgttttgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcagggaactggacaagaataaatgtcattgagaggttttgttaccaatctgttttgag 620
Query: 421 ctaccatgtgagctaccgatttatattattcacaacattatgaggccgattctcattgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaccatgtgagctaccgatttatattattcacaacattatgaggccgattctcattgcc 680
Query: 481 ctggaac 487
|||||||
Sbjct: 681 ctggaac 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
