BAC Information

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BAC

Clone NameMSMg01-072N08
Chromosome2 (Build37)
Map Location 109,553,326 - 109,553,525
singlet/doubletsinglet
Overlap geneBdnf
Upstream geneLOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
Downstream geneLOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072N08.T7 (MSMg01no072_n08.b1)MSMg01-072N08.TJ (MSMg01no072_n08.g1)
ACCAG296278AG296279
length712711
length of high quality
(start - end)
204 (47 - 250)382 (76 - 457)
definitionCHROMAT_FILE: MSMg01no072_n08.b1 PHD_FILE: MSMg01no072_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:42 2005CHROMAT_FILE: MSMg01no072_n08.g1 PHD_FILE: MSMg01no072_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTACCTTGCCATCCTAGTCTTAGGCACAGCTGCCAAGTTCCAG
AGGTCCTAAGTACTGCCATTAACATCGCCTCAGGCAACCTAATGTTTCCC
ACAATCAATGGAGGTTTCTGAATGTCGAAGACCCCTAGCGAGACCTGTTC
CTACCTGCCCTTCTCCTTTGCCTAAACAGTACATGACTCTAACAAATGAG
CCCTAGTACCAAGCATTCCTATCTCATTTGCATATCACATGTGCATTTCT
AAATATCCTCCGGAACAGCTATTTTTAATTATAGGTCCCAATTGGTATCT
GACAATCAAGAACTAAAATTGTTTTAAATTAGGATTTTATTTTCTTCTAA
AATCCTGGCAGGATTTGCTACTATTCTCCCTATCCACGTATTTTTTACTA
AATTCTTGTACTTGGTTTACAAACATTATTAACTTTCTATTATTGTCATT
ATGTGTTATTGACTAATTATGTAATGTGTAACCTGCATCATCTCTCGAAT
TATCATATTTAATGACAGAAGCTCATCAACTATATGTCACCTCGCTTGGA
ATTTTAATAATTATTCTTTTTTCCATGTCTATATGTTTTGCCTGCCCGCT
TGTCTTTCCTATATTTTTTGCCCGCTTCCCCTGTCGGTTAGATTCCCCTC
TCTTTATTTCGG
CCTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAACATATGGAAAAGATTACACA
CCACAATAAAGTCAACTTCATCCCAGACACACAGAAATTGTTCAATATAT
ATAAATCAATAAATGTGATCCACCACATATACAAACTAAAACACAGAAGC
CATATGATTATCTCATTGGATGCAGGAAAGGCCTTAACACAATCCAACAT
CTCTTTATGATAAAACTTTTGGGAAGACAAGGAATATGATGGATATATCT
CAACATAATAAAGAAAACTGATAGCAAGCTGGCAGGAAACATTCTAAACA
GAAAGAAACTCAAAGCACTACCTACTACTAAAGTCTGAAAAAAAGCAAAG
ATGTCCACTCATCCCTCCTCAACATAGTGCTTGAATTTGTATCTACTTCT
ACAAATGAAGATGGTCAAGGGACTACAAATAAGAAAGAAGTCAAAGTAGG
CTTACTTTTAGATGCTATAATTTTATAGATGAAAAACCCTAAAGTCTCCA
GCAAAAATCTGCTGATTAATACGATCAACACAGTAGTAACATACAAAATT
GACTCACAAAAATGACTAGTCTTCCTACAGACTTAATGACAGACGTAGTT
TTTAAAAAAAAAAAAAGAGGGCTGCGCAGTGGTGTCGCACGCCTTTAACC
CCTTACTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_n08.b1 MSMg01no072_n08.b1 CHROMAT_FILE:
MSMg01no072_n08.b1 PHD_FILE: MSMg01no072_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:42 2005
         (204 letters)



>mm_chr2_109553122_109553725
          Length = 604

 Score =  356 bits (184), Expect = e-103
 Identities = 196/200 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctaccttgccatcctagtcttaggcacagctgccaagttccagaggtcctaag 64
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 404 gaattctctaccttgacatcctagtcttaggcacagctgccaagttccagaggttctaag 345

                                                                       
Query: 65  tactgccattaacatcgcctcaggcaacctaatgtttcccacaatcaatggaggtttctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tactgccattaacatcgcctcaggcaacctaatgtttcccacaatcaatggaggtttctg 285

                                                                       
Query: 125 aatgtcgaagacccctagcgagacctgttcctacctgcccttctcctttgcctaaacagt 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 284 aatgccgaagacccctagcgagacctgttcctacctgcccttctcctttgcctaagcagt 225

                               
Query: 185 acatgactctaacaaatgag 204
           ||||||||||||||||||||
Sbjct: 224 acatgactctaacaaatgag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)