BAC Information

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BAC

Clone NameMSMg01-073B21
Chromosome2 (Build37)
Map Location 6,389,435 - 6,389,991
singlet/doubletsinglet
Overlap genenone
Upstream geneCamk1d, LOC666599, Cdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl
Downstream geneLOC100040387, Cugbp2, LOC100040659, LOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073B21.T7 (MSMg01no073_b21.b1)MSMg01-073B21.TJ (MSMg01no073_b21.g1)
ACCAG296495AG296496
length713720
length of high quality
(start - end)
557 (63 - 619)527 (71 - 597)
definitionCHROMAT_FILE: MSMg01no073_b21.b1 PHD_FILE: MSMg01no073_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:05 2005CHROMAT_FILE: MSMg01no073_b21.g1 PHD_FILE: MSMg01no073_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTAAACGACTCCTATATTCAGAGAATCCGCGGAATTCTTTGC
CCTATACTGGCATGTTCTAAATTTCGAGCCAATGGGAAAACAACAACAAC
CCAAAACAAGACAATAAGGAAAATCTCCTCGGGCAATGTGAACCAGCCGG
CTTGTCTCCTGGAATCTATCAGTCATTCCCATGTTGGGGGAAAGCCTGCT
GAGGCATGCGGTGGGTGGGCTGCTCAGGGTGGTTAAGTCCGCTTCCCTTT
TGGGCTCCAAACACCACGATCAGAGGACTGCTGAGCCCGCGAGTGTGCTG
ATTTCTCCACATGAAGCTATTGCTGCCCAGGAAGCCATAGGGTCACCTGG
AGGTGGCACTAGGCAGAGAGACACAGGAGAGTCACTGTTGCTGCCTTGGG
TTCAGCCTCCCTCACATGCCCTGCTGGGTTCCAGGAAGACTCTGGGTCCT
CAGTGAGCCTTAATCTCCTCCACTGGGAAATAAGGCCCCTGTACAACAAC
AGCCCAGCACCCGAGGAGTGATGAACACTGACATCACACTCACAGGACAG
AAAACAGCTCAGAATACACTGTGCCTACCACATACACTTGTTCGTGGACA
TCATACATGCATATGCACGCATACACGCACGCATGCGTGTGCGAGCGCAC
CCACACACATATACCAATATAAATATTTTTCAAGTTATTAAGAAGTATGC
CGTGTTGCGTTGC
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGC
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGTACTCACTGACAAGTGGAT
ATTAGCCCATAACCTAAGATACCCAAGATATAATATACAATTTCCTAAAC
ACATGAAACTCAAGAAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_b21.b1 MSMg01no073_b21.b1 CHROMAT_FILE:
MSMg01no073_b21.b1 PHD_FILE: MSMg01no073_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:05 2005
         (557 letters)



>mm_chr2_6389235_6390191
          Length = 957

 Score = 1007 bits (521), Expect = 0.0
 Identities = 548/557 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttctaaatttcgagccaatgggaaaacaacaacaacccaaaacaagacaataaggaaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgttctaaatttccagccaatgggaaaacaacaacaacccaaaacaagacaataaggaaa 698

                                                                       
Query: 61  atctcctcgggcaatgtgaaccagccggcttgtctcctggaatctatcagtcattcccat 120
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 697 atctcctcgggcaatgtgaaccagccggcttgtctcccggaatcaatcagtcattcccat 638

                                                                       
Query: 121 gttgggggaaagcctgctgaggcatgcggtgggtgggctgctcagggtggttaagtccgc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 637 gttgggggaaagcctgctgaggcatgcggtgggtgggctgctcagggtggttaagtcccc 578

                                                                       
Query: 181 ttcccttttgggctccaaacaccacgatcagaggactgctgagcccgcgagtgtgctgat 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 577 ttcccttttgggctccaaacaccacgatcagaggactgctgagcccgcaagtgtgctgat 518

                                                                       
Query: 241 ttctccacatgaagctattgctgcccaggaagccatagggtcacctggaggtggcactag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttctccacatgaagctattgctgcccaggaagccatagggtcacctggaggtggcactag 458

                                                                       
Query: 301 gcagagagacacaggagagtcactgttgctgccttgggttcagcctccctcacatgccct 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gcagagagacacaggagagccactgttgctgccttgggttcagcctccctcacatgccct 398

                                                                       
Query: 361 gctgggttccaggaagactctgggtcctcagtgagccttaatctcctccactgggaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gctgggttccaggaagactctgggtcctcagtgagccttaatctcctccactgggaaata 338

                                                                       
Query: 421 aggcccctgtacaacaacagcccagcacccgaggagtgatgaacactgacatcacactca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aggcccctgtacaacaacagcccagcacccgaggagtgatgaacactgacatcacactca 278

                                                                       
Query: 481 caggacagaaaacagctcagaatacactgtgcctaccacatacacttgttcgtggacatc 540
           |||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct: 277 caggacagaaaacagctcagtatacactgtgccttccacatacacttgttcgtgggcatc 218

                            
Query: 541 atacatgcatatgcacg 557
           |||||||||||||||||
Sbjct: 217 atacatgcatatgcacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)