BAC Information

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BAC

Clone NameMSMg01-073C17
Chromosome2 (Build37)
Map Location 120,335,779 - 120,336,089
singlet/doubletsinglet
Overlap geneZfp106
Upstream geneExdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3
Downstream geneSnap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073C17.T7 (MSMg01no073_c17.b1)MSMg01-073C17.TJ (MSMg01no073_c17.g1)
ACCAG296535AG296536
length728727
length of high quality
(start - end)
317 (43 - 359)483 (73 - 555)
definitionCHROMAT_FILE: MSMg01no073_c17.b1 PHD_FILE: MSMg01no073_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:09 2005CHROMAT_FILE: MSMg01no073_c17.g1 PHD_FILE: MSMg01no073_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCACTAAGGACTTCCCAACGTGGGAGGCAAAAAACTTCATGAATCTA
TTTTGCTGTCATCTTCAGCGTGGCGTTCAATATGTCCTGCAACGTCCTAG
GGAACAATGAGAGAGGGGGGTCACAGGTCAGAGTTAAAGCTGAGGAGCAC
AGCACTGCATCGCATACACAGTGAGGGTGGGAGGCTCTGGCACCTCTTAA
CCAACAGGAAACCATCCCCTTAAAGATGACATCTCCCCTTTGCACGAGAG
CACATGTGCTTATTAAAAACTGTTTAATTTTTTTTTTTTTTAGATCTAAT
TTAATTATCTTAATGACCTCCGAACGAAACCCGATAGTTCCTAGGCACTC
CCCGTTGACTGCAATTCTGACCAAAATAAAAAGCTGGGAGGGGTGGGGCT
CAGGTCCTCTGCTGAGTCAGGTGTACCCCACAGAAATACCTGCTTGGATC
CTTTCCTGGCTGTAATAAAGGCATCGCATTTCCTCTTTCGACACTTCAAC
GTCTGGAAGTGTGATTGGTGTGCACCTTCTGTAAGAGTTGTTTCATGTTT
CTCCTATTGCCTCATTTTTTTGTTCAGTCTTCCTTGTGCTAGATATAACA
TCATGTGCCTGGTCGTGAACATATTCACTTCTGTCTTCTGTGTTACTATT
TCGCTCTTACTTCTTCCTCTTTCCATCT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAGGAAG
AAGCAGCTCATTATGAGAGAAAAGGGTACCAGCCAGATAAAGTGCTAGCT
AATCAGTTAAGGAAAAAGCCAAAAGCGGCTGGCAAAGGCCAGTTTGCTGC
TTGGCCTCCGGGCAGTCGGCTTCAAGGTGCACTTCCGCCCTATGCGGAGC
CCCCGCCCTGCGTAGTGCGTCAGCCCTGCGCAGAGAGACAATGCGCAGAG
AGGCAATGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACA
ACAGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTC
CGGTAGAATATGTGCAGATTAAAGAGCTTGCCGAGTCGGTCCGTAAATAT
GGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGGCAT
GGCACTAACTCCTGCCGACTGGCAAATGATTGTAAAAGCCGCTCTCCCTA
GTATGGGCAAATATATGGAATGGAGAGCTCTATGGCAAGAGGCTGCACAA
GTGCAGGCCCGAGCAAACACATCTGCTTTGACTCCAGAACAGAGAGATTG
GACTTTTGACTTGTTAACGTTCAGGGAGCTTATTCTGCTGATCAAACAAC
CAACCATTGGGGAGTTTATGCCCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_c17.b1 MSMg01no073_c17.b1 CHROMAT_FILE:
MSMg01no073_c17.b1 PHD_FILE: MSMg01no073_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:09 2005
         (317 letters)



>mm_chr2_120335575_120336291
          Length = 717

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcactaaggacttcccaacgtgggaggcaaaaaacttcatgaatctattttgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcactaaggacttcccaacgtgggaggcaaaaaacttcatgaatctattttgc 264

                                                                       
Query: 65  tgtcatcttcagcgtggcgttcaatatgtcctgcaacgtcctagggaacaatgagagagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 tgtcatcttcagcgtggcgttcaatatgtcctgcaacgtcctagggaacaaggagagagg 324

                                                                       
Query: 125 ggggtcacaggtcagagttaaagctgaggagcacagcactgcatcgcatacacagtgagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggggtcacaggtcagagttaaagctgaggagcacagcactgcatcgcatacacagtgagg 384

                                                                       
Query: 185 gtgggaggctctggcacctcttaaccaacaggaaaccatccccttaaagatgacatctcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgggaggctctggcacctcttaaccaacaggaaaccatccccttaaagatgacatctcc 444

                                                                       
Query: 245 cctttgcacgagagcacatgtgcttattaaaaactgtttaattttttttttttttagatc 304
           |||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||
Sbjct: 445 cctttgcacgagagcacatgtgcttattaaaaacagcacaattttttttttttttagatc 504

                      
Query: 305 taatttaatta 315
           |||||||||||
Sbjct: 505 taatttaatta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)