Query= MSMg01no073_d18.b1 MSMg01no073_d18.b1 CHROMAT_FILE:
MSMg01no073_d18.b1 PHD_FILE: MSMg01no073_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:14 2005
(273 letters)
>mm_chr9_74176555_74177227
Length = 673
Score = 482 bits (249), Expect = e-140
Identities = 261/265 (98%)
Strand = Plus / Minus
Query: 8 gaattcttctcctggcccatttcccaaccactcttcccacaacaagggttgaaccaggtc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaattcttctcctggcccatttcccaaccactcttcccacaacaagggttgaaccaggtc 413
Query: 68 aggatataaaccccaggtaggagaacacggcttcctcttgggggatcctttgctagctgt 127
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 412 aggatataaacccaaggcaggagaacacggcttcctcttgggggatcctttgctatctgt 353
Query: 128 gtccactaagccctgtggctgtgaagctcacactgaccagacagcagcagagaccatgtg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gtccactaagccctgtggctgtgaagctcacactgaccagacagcagcagagaccatgtg 293
Query: 188 ttgaaaatgatcaaactcagaggtttattggagtggaatgggtgggagaggcgttcaaag 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttgaaaatgatcaaactcagaggtttattggagtggaatgggtgggagaggcgttcaaag 233
Query: 248 agcacttcctgtcggctagtaaaag 272
||||||||||||||| |||||||||
Sbjct: 232 agcacttcctgtcggttagtaaaag 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no073_d18.g1 MSMg01no073_d18.g1 CHROMAT_FILE:
MSMg01no073_d18.g1 PHD_FILE: MSMg01no073_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:14 2005
(509 letters)
>mm_chr2_160957581_160958492
Length = 912
Score = 845 bits (437), Expect = 0.0
Identities = 493/513 (96%), Gaps = 5/513 (0%)
Strand = Plus / Plus
Query: 1 cctttaactgaacatccatcaagcgccagcctattatacttccagaccaa-cttaggcaa 59
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 201 cctttaactgaacatccatcaagcgccaggctattatacttccagac-aatcttaggcaa 259
Query: 60 caggcacaacagtctttatcttatagctgaggatgcagtggctcagagactaggtaattt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caggcacaacagtctttatcttatagctgaggatgcagtggctcagagactaggtaattt 319
Query: 120 gttcaaggacacacagttgcatttgaactttgcacctaatgctttacagtgtttttgctt 179
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 320 gttcaaggacacacagttgcatttgaactttgcacctaatgctacacagtgtttttgttt 379
Query: 180 tgtttggaggtggtgtgttgctacctatgcctcagcatacagatagccagagctacaagt 239
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 380 tgtttggagatggtgtgttgctacctatgcctcagcatacagatagccagagatacaact 439
Query: 240 gtctccctttgtgcctagctaaagctgtgatcccttcaggtcacttttggtaaatgcata 299
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 440 gtctccctttgtgcctacctaaagctgtgatcccttcaggtcacttttggaaaatgcata 499
Query: 300 cccagggcacctgtaccatcccctaatttctattctttgacatgtagggacccagctgca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cccagggcacctgtaccatcccctaatttctattctttgacatgtagggacccagctgca 559
Query: 360 ggtctagctcct---ctttcctgaaccagccaggtgaggctggttcaatgattaatataa 416
|||||||||||| |||||||| |||||||||||||||||||||||||||| ||| | |
Sbjct: 560 ggtctagctccttctctttcctggaccagccaggtgaggctggttcaatgatcaatctga 619
Query: 417 caaaagtggtcatagtgccctgaaatcttgtatggctgaggttaattcttggactcacaa 476
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 620 caaaagtggtcatattgccctggaatcttgtatggctgaggttaattcttggactcacaa 679
Query: 477 gaacctatcaagttcagtctcctcttatttctt 509
|||||||||||||||||||||||||||||||||
Sbjct: 680 gaacctatcaagttcagtctcctcttatttctt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 912
Length adjustment: 10
Effective length of query: 499
Effective length of database: 902
Effective search space: 450098
Effective search space used: 450098
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
