BAC Information

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BAC

Clone NameMSMg01-073K01
Chromosome2 (Build37)
Map Location 51,563,286 - 51,563,597
singlet/doubletsinglet
Overlap geneLOC433426
Upstream geneLOC227885, Rnd3, LOC666802, LOC666810, LOC100041614, Tas2r134
Downstream genePpia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073K01.T7 (MSMg01no073_k01.b1)MSMg01-073K01.TJ (MSMg01no073_k01.g1)
ACCAG296878AG296879
length7101,124
length of high quality
(start - end)
318 (47 - 364)---
definitionCHROMAT_FILE: MSMg01no073_k01.b1 PHD_FILE: MSMg01no073_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:45 2005CHROMAT_FILE: MSMg01no073_k01.g1 PHD_FILE: MSMg01no073_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTCTCTTATTTTAAAAAATTATGAGGCTCTTAATTTCTGTAGC
TATTGAATACCTGAGGTTAAAAATAATCCTAAATGAATAACACTGGGCAT
ATTATCATCACAACAAGGACATTATTACCCTGACCAGCTGTTTGCTGCTT
CTCTCTTGCAATATTGGCATTGGGGTTTTTGAGTCTTTGATGCCAGCATA
GCTTGTATGTTTATAACAAGTAAATAAATCAAACAGTATTGTCCACTAGC
TGTTTAATATGCAAGTCCAATTGAATCACCATCTTTCCCTGTATTACATG
CACAAAGACAATTTTTTTTTGCCCCCCCCCCCCCTCAGGTATGTTACAGG
TGTGCTCAGGTCTTATCACTTTTATAAAACATAAAATTGTGCTAGGGTTT
GGGAATTTTGCACAATGCACTCCAATCACATTCACTTCCCATTCGTTCCA
GTCTCACCCTCTCTCTCTTGTAATTCCTCTCTTCCCCCATTCCCACTCAC
CATTTATTTCTCCCCCGTTAAAATTTTCACTGTCCATTTACCTTTTGCCA
CCTCTGCATATATCCTACTCTTTACTACTACTCCTCTATCATATCACTTT
CTCACTTATTTCTTCTTTCCCCCTTTACCTCTATCACTCCTACTCCGTTC
CCTTTCCTAC
AAAAAAAACGAAAGGAATAGTGCAGTAAGGCCCGGGNNNGGNNNGNNCNG
NNNAATACCCNTAGCCCTGCCNNNGNNNNNNNNNNNNNNNNGGNNGTGAC
GNAAAAAAGAAAGCNGGGGNGNNNNNGNNNGGGGGGGNNNNNNNNNGGCG
GCGCCGCCGCGAAGGGNNNGNCGNGTGTTTTTGGCCGTCCTTNTNCGNGN
CGCGGGGGGCCGCGCCGNGTGCGCTGCGCGGNTGCCGCCCTCTCTCTTGT
GTCTGCCCCGAGCCTGCGTGGCCGCCTCTTTGTTCTNCGGCTCCGTAGCT
TGTGCCGTAGCGTTGCGTAGGCATCACGTGTGTCTCTATGCTGCGTTGTC
GTGCCGTGCACTGTATCAGACACAACTCGTTTTTTATGTTTCAGCGTCAG
CACGTAGAAGGTGCAGCACTCATTCTCATGAAAGGACTATGACCTTCCTC
AGGTCACACGTCGCCGGCGCAGCGCATTATGAGGGGTGAGGGGTTGTCNG
CACCACACAGGCGGAGAAGGAGNACGGCAGGGCCCGCCACCGTTTGTAGA
GCACCACCCCGCCGCCGCAAAGAAAGAGGAGAGAGGAAGAGGAGAGCAGA
ANACGACGGACAACCACAACGACACGCAGCACCAGGCGCACCAACCGAAG
CAGGCAGCGAAGCCACCAGACCACGCGAAGCAAAGAGGCGGCAGGGCAAC
GGCCGAGCAGCGCGCAGAGCGACCGGGCGACAAGAGAACCAAGAGGAGGG
GAGGAAGAAGCCGCCGCGGGCGGGGNAGAGCGGAGGGCGCAGGAAGCGAC
GACGCCGCCAGCACGCGCGGACGGNGGAGCGCGCCACGCACCAGACGCGG
ACGGCGGGGGCGNCCCAAGGCCACACCGAGGCCGACCGAGGGCAAGGGGA
AAGGAGCGCGCGCGCGAGCGCGCCCCGGAGACGCAGGCGAAGCCGAGAAG
AAGGAAGGCGAGCACGCGACCAAAGCGTCGCAACAGTTTTCTAGCATAGA
TCTAGTTCGCCTTCTTCAACTATATTCCGCACCGTCATANCGANACCCTG
ATCTCTTTTGTTTGGTTGCTTTCCACAGCGTACACCGCCAGGCAAGCAGG
AGAATTCGCTATTGTTGGCGGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_k01.b1 MSMg01no073_k01.b1 CHROMAT_FILE:
MSMg01no073_k01.b1 PHD_FILE: MSMg01no073_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:45 2005
         (318 letters)



>mm_chr2_51563082_51563800
          Length = 719

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%), Gaps = 1/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctcttattttaa-aaaattatgaggctcttaatttctgtagctattgaata 63
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctcttattttaataaaattatgaggctcttaatttctgtagctattgaata 264

                                                                       
Query: 64  cctgaggttaaaaataatcctaaatgaataacactgggcatattatcatcacaacaagga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgaggttaaaaataatcctaaatgaataacactgggcatattatcatcacaacaagga 324

                                                                       
Query: 124 cattattaccctgaccagctgtttgctgcttctctcttgcaatattggcattggggtttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattattaccctgaccagctgtttgctgcttctctcttgcaatattggcattggggtttt 384

                                                                       
Query: 184 tgagtctttgatgccagcatagcttgtatgtttataacaagtaaataaatcaaacagtat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgagtctttgatgccagcatagcttgtatgtttataacaagtaaataaatcaaacagtat 444

                                                                       
Query: 244 tgtccactagctgtttaatatgcaagtccaattgaatcaccatctttccctgtattacat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtccactagctgtttaatatgcaagtccaattgaatcaccatctttccctgtattacat 504

                       
Query: 304 gcacaaagacaa 315
           ||||||||||||
Sbjct: 505 gcacaaagacaa 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space:   219390
Effective search space used:   219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)