BAC Information

Click to search

BAC

Clone NameMSMg01-073O20
Chromosome2 (Build37)
Map Location 113,007,528 - 113,007,844
singlet/doubletsinglet
Overlap genenone
Upstream geneGA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073O20.T7 (MSMg01no073_o20.b1)MSMg01-073O20.TJ (MSMg01no073_o20.g1)
ACCAG297106AG297107
length722755
length of high quality
(start - end)
324 (45 - 368)309 (73 - 381)
definitionCHROMAT_FILE: MSMg01no073_o20.b1 PHD_FILE: MSMg01no073_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:08 2005CHROMAT_FILE: MSMg01no073_o20.g1 PHD_FILE: MSMg01no073_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATCGTCTGGCCATTGAGGGAAGGGAATAATTAGAACAGGATGAG
TATATAAGGAAGGAAGAAATTCACAGCCATGTGTTGAAGGCACTCTGTAT
TCCCTATCAGTGGGGAAAAGACTCGAGCATGGCTGATTCTATCACAAAGG
AACACATGGTAGAGACCACAAGGGAAGTGTGAATGAGTCACATAGAAAAA
TCCATTTTTACAGGAAAAAAAAAAAACCCATACTGTCTGCTCTCAGTGCT
GAAGGATGGTGATGAGACTTAAGGGTCTTTTCACCATGAAGCTCCATGTA
AGAAAAGCCATGGAAGAGACACGAGGAGCTAGTCTCCAGCTCAGTTCAAA
CACTGCGGGGAAAAGGAAGCTGAGATGGACAAGGAAGCCTAGAGCTGCTG
TGGATGCTAGGCTATTGTTCAGATCCATTACATAGGACGTGGGAGCCACT
CAAGGCATTGGGACCGAACACTAAACTATTGGGATTTTTATATGTGGTGG
GCAGGCTTCTACTCCTGTAAGGGGGGAGAGAGTGAATAAGGGAGTCAAAT
AACATTGGAGATTAAACTGTTTTTAGATCCATACTTTTCTCTCTTCTTCT
TCCCTATCTTTATTCTTTTACTTTTCTTTTTTGTTTCTCTTTCGCCCTCC
TACTATTATCTCTCTTTCTCCA
CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACATCGATGCTGGCGAGGATGTGGAGAAAGAGGAACATT
CCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTGGCAGTTCTCCTCAGAAAATTGGACATAGTATTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAGTGTCCCCAACCGGAAAAACCA
CTGGGNTTCCCAAATGTTTAAAGCCTCTCTCATTTTATAATATACCCAAA
GCTGGAAAGAACCCACATGCCCCTCTACCTAAGGATGGATTCCTAAAAAT
GGGTGATTTTTTCTTCACGGGGATGATACATCGCCTTTTTAAAATAAAGG
AATTTTTTATCTTCCCTTTTTCGTGTGGTGGGGTTTACGTCGTTCCTCTT
CCTCCATGGGGGGGAACCACTTTTCTATAGGAATTTTCCCCTTTTTTATT
TTGGGTTTCCCCCCTCCTTTATTCCCTCAATCCCCCCCTTTATCCCATAA
AAATTTCACTATATTCCCTCTGTCATACCAATATATAAACGACTTTCCCT
CCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_o20.b1 MSMg01no073_o20.b1 CHROMAT_FILE:
MSMg01no073_o20.b1 PHD_FILE: MSMg01no073_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:08 2005
         (324 letters)



>mm_chr2_113007324_113008044
          Length = 721

 Score =  572 bits (296), Expect = e-168
 Identities = 313/320 (97%), Gaps = 3/320 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatcgtctggccattgagggaagggaataattagaacaggatgagtatataag 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatcgtcaggtcattgagggaagggaataattagaacaggatgagtatataag 264

                                                                       
Query: 65  gaaggaagaaattcacagccatgtgttgaaggcactctgtattccctatcagtggggaaa 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaggaaggaattcacagccatgtgttgaaggcactctgtattccctatcagtggggaaa 324

                                                                       
Query: 125 agactcgagcatggctgattctatcacaaaggaacacatggtagagaccacaagggaagt 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agacttgagcatggctgattctatcacaaaggaacacatggtagagaccacaagggaagt 384

                                                                       
Query: 185 gtgaatgagtcacatagaaaaatccatttttacaggaaaaaaaaaaaacccatactgtct 244
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 385 gtgaatgagtcacatagaaaaatccatttttacaggaaaaaaaaa---cccatactgtct 441

                                                                       
Query: 245 gctctcagtgctgaaggatggtgatgagacttaagggtcttttcaccatgaagctccatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gctctcagtgctgaaggatggtgatgagacttaagggtcttttcaccatgaagctccatg 501

                               
Query: 305 taagaaaagccatggaagag 324
           ||||||||||||||||||||
Sbjct: 502 taagaaaagccatggaagag 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 721
Length adjustment: 9
Effective length of query: 315
Effective length of database: 712
Effective search space:   224280
Effective search space used:   224280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)