BAC Information

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BAC

Clone NameMSMg01-074I18
Chromosome2 (Build37)
Map Location 12,578,976 - 12,579,144
singlet/doubletsinglet
Overlap genenone
Upstream geneIl2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
Downstream geneLOC100040837, Pter, C1ql3, Rsu1, Cubn, Trdmt1, Vim, St8sia6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074I18.T7 (MSMg01no074_i18.b1)MSMg01-074I18.TJ (MSMg01no074_i18.g1)
ACCAG297577AG297578
length698722
length of high quality
(start - end)
234 (126 - 359)170 (75 - 244)
definitionCHROMAT_FILE: MSMg01no074_i18.b1 PHD_FILE: MSMg01no074_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:56 2005CHROMAT_FILE: MSMg01no074_i18.g1 PHD_FILE: MSMg01no074_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTGTTTCCTGCACTTCTTTACCTTATGTTAGTCCTTAGTAATC
GCACAGAGAGACCAAGTACTGCCCACTGCACCTCAATAACTGAGCAGTTA
AAAGATCTATCTCCTATGCTACTCTGGCTACCTCCCAGCACCATCCCATT
ATATGTCATTATTATTGTTCTGGCTCTTTGGACTTCAGGTGTGTTCTGTG
TTCTGTCTCCAGACCCCTTCCTCATCCTCCCAGCTGATCTGATTATCCTC
TCTCCCTCTCACCCTTTCTTCTTCTCTCGTCCCTCTGACCTGCAGACCTG
TCCTGTTCTCTATTCTGCCCCCCTATTGGGTGATCAGTATTTATTGACAA
GGTATAGAATAAGCGCTAAAAATTGTATACACAAACTCGAGAATGGAGAT
TCTTGGCATAAGCACTACTAATGTCATTTCCAGATAGAAACAAGATATTA
GGGCAGAGAAATCAGCATTCGAGCACCACGAGGTTAAACTTTACACAGCT
CACACAATTATTATGCCTCCATCAGGACATTGATAAACCCCCTGGGGTCT
TAGGCATCCAACTTCAGATTGTTCGGTTTGCCTGCAAGCACCTTTACCTT
TTGAGTCTTCTACCCACTCCTTACCTCCCCCACACTAACTAATCTTTC
CGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAATTAATATAACTAACAGAACACTG
TTATGGTAAAGTTTAGTGTTCACCGATAATAATTTCACAGTATTGCAAGC
CTACTATAATGGTTAAGAAAGAAAAATATAAATGTATTTCGTGTGAGTCT
GTGTATGTGTGAGTGTGTATATGTATGTATATGTATGTTATGTGAGCGTT
CTCCTCCTGCCTCATTGTTTCATCTTTTTGTTAATTTAAATCTACTTCTT
CATATATTATAAAAGTAATTTTTTTTTTTCATTCCATCCCCCTGCGAGAC
AAAATTATTTTTTTTTTCTCCCCCCTCCCCCCCCCATTTATATCTCCCCG
GACCTGAGGAAGTCTTCCCCCATTTAAAAAAAAAAATTTTTTGGGGCGTG
GGTGCTTTCACCTTTTCCCCTTCTCCTATCCATTTCCCTTAATCTTCCCT
CTCCTCTTTTTTCTTTCCTTTTTCTTTATTCTTTTTCTTTATCTTTTTCC
CTTTATTATTTTTACCTATTATCCCCCTCCCCTTTTTTTTTCTTTTTCTC
TCTTATCTCTATTCCTTCCTTTTCTTTCTTCCTTCCTCTCTCCCCCCCTT
TCTTTTTCCCCCTCCACTCTCCCTCCTCTTTTTTACCTTTTGTTCCCTTT
TCCCCATTCCTTATGTGCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_i18.g1 MSMg01no074_i18.g1 CHROMAT_FILE:
MSMg01no074_i18.g1 PHD_FILE: MSMg01no074_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:56 2005
         (170 letters)



>mm_chr2_12578844_12579413
          Length = 570

 Score =  282 bits (146), Expect = 6e-81
 Identities = 164/170 (96%), Gaps = 1/170 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattaatataactaacagaacactgttatggtaaagtttagtgttcaccgataataatt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||
Sbjct: 301 caattaatataactaacagaacactgttatggtaaagattagtgttcaaagataataatt 242

                                                                       
Query: 61  tcacagtattgcaagcctactataatggttaagaaagaaaaatataaatgtatttcgtgt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 241 tcacagtattgcaaacctactataatggttaagaaagaaaaatataaatgtattt-gtgt 183

                                                             
Query: 121 gagtctgtgtatgtgtgagtgtgtatatgtatgtatatgtatgttatgtg 170
           |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 182 gagtctgtgtatgtgtgagtgtgtatatgtatgtgtatgtatgttatgtg 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)