Query= MSMg01no074_l02.b1 MSMg01no074_l02.b1 CHROMAT_FILE:
MSMg01no074_l02.b1 PHD_FILE: MSMg01no074_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:08 2005
(247 letters)
>mm_chr2_110772963_110773606
Length = 644
Score = 416 bits (215), Expect = e-121
Identities = 236/247 (95%), Gaps = 9/247 (3%)
Strand = Plus / Plus
Query: 4 ggaattcttt---atatctcaaatttacagctgttatacaaacaatgcaaatttcaatat 60
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttaaaata--tcaaatttacagctgttatacaaacaatgcaaatttcaatat 261
Query: 61 attcttggttccttaaaaaaggaaaaggtaataaagctaaacacacactgaaataaagga 120
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 262 attcttggttccttaaaaaaggaaaag----taaagctaaacacacgctgaaataaagga 317
Query: 121 agagagaaatgaagaaagtaaggaagcaaagccagaaggggctacagaggagagagaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agagagaaatgaagaaagtaaggaagcaaagccagaaggggctacagaggagagagaggg 377
Query: 181 gggaggaagggagggagacggagacagagacagaggcagaggtgtgagtcaaatttggaa 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 378 gggaggaagggagggagacggagacagagacggaggcagaggtgtgagtcaaatttggaa 437
Query: 241 attattc 247
|||||||
Sbjct: 438 attattc 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 644
Length adjustment: 9
Effective length of query: 238
Effective length of database: 635
Effective search space: 151130
Effective search space used: 151130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no074_l02.g1 MSMg01no074_l02.g1 CHROMAT_FILE:
MSMg01no074_l02.g1 PHD_FILE: MSMg01no074_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:08 2005
(576 letters)
>mm_chr2_110940063_110941038
Length = 976
Score = 1029 bits (532), Expect = 0.0
Identities = 565/576 (98%)
Strand = Plus / Minus
Query: 1 actattggtattgactttgacaggatagtgttatgcatcttccatccaggcatattcctc 60
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 776 actattggtattgactttgtcaggatagcgttatgcatcttccatccaggcatattcctc 717
Query: 61 attcatcaacaggaataagtccaagagtcacaaatcctcctaaggcaggagaaggtaaga 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 716 attcatcaacaggaataagtacaagagtcacaaatcctcctaaggcaggagaaggtaaga 657
Query: 121 cttatgtgtcatcaataagtcatttgaaatattgtttattaaaatcaggtgagccatata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cttatgtgtcatcaataagtcatttgaaatattgtttattaaaatcaggtgagccatata 597
Query: 181 ttttaatagcccaataactgcttctcaaatgtttagtgagggttaagatgtattcaatgg 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ttttaatagcccaatagctgcttctcaaatgtttagtgagggttaagatgtattcaatgg 537
Query: 241 taatttattatacagctcatggacgttagtaccactttgggttgttggtcaaaaagattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 taatttattatacagctcatggacgttagtaccactttgggttgttggtcaaaaagattt 477
Query: 301 gcatgacaagtacatggtaaaatacttctgtttgggtaatttcaaaattaaaattttgaa 360
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 476 gcatgacaagtacatggtaaaatacttctgtttggggaatttcaaaactaaaattttgaa 417
Query: 361 taaaaatttagaagtgaagaacaaaattatagtgtgcaggtagttatatcaatcgatgaa 420
|||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 416 taaaaaattagaagtgaagaacaaaattatagtatgcaggtagttatatcaagcgatgaa 357
Query: 421 cagattatattttgtactgtccagtgataattttgattgatatattatttgaaaattccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cagattatattttgtactgtccagtgataattttgattgatatattatttgaaaattccc 297
Query: 481 tgaatttcagtttgcttcaattttatatacacatctaattggtatcaggcatatcatttt 540
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgaatttcaatttgcttcaattctatatacacatctaattggtatcaggcatatcatttt 237
Query: 541 tcttcttatcattggtattcattctctccctcaaat 576
||||||||||||||||||||||||||||||||||||
Sbjct: 236 tcttcttatcattggtattcattctctccctcaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
