BAC Information

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BAC

Clone NameMSMg01-074M06
Chromosome2 (Build37)
Map Location 94,350,190 - 94,350,424
singlet/doubletsinglet
Overlap genenone
Upstream geneAlx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5
Downstream geneLOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074M06.T7 (MSMg01no074_m06.b1)MSMg01-074M06.TJ (MSMg01no074_m06.g1)
ACCAG297743AG297744
length745726
length of high quality
(start - end)
---236 (121 - 356)
definitionCHROMAT_FILE: MSMg01no074_m06.b1 PHD_FILE: MSMg01no074_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:14 2005CHROMAT_FILE: MSMg01no074_m06.g1 PHD_FILE: MSMg01no074_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TGTAATATCCCTTATGGGTGAATAGAGATGTTTTGAAATTTTTCATAATG
AAATCTATTAAGTATAGACCCGAAGAAAGGCTCCCCTGCAATTCAGTGCC
TGGGCAGCTGACACAGGAGAGTTGTTTGAGGGCTCAGCTCCTGCCCAAGT
TGTTAACAGACCTCACCATTATTCATGTGATGCAGGTCTACCAGCTATGT
GGAATGCACCAGTTGAGAGACCATGAAACCTTCTTTGCTGATCTCAAAAG
ACTATGCAGATCAGGCAAGGCGTGACAGTGTCACAGCTCCTTTACGCAGC
CTCTGATATGTACTATGTTACCGTGCAGTCTTACCTAGACCTACTCCCCT
ATTACACTTGCCACACCATGATCAAGATAAATCCTTTCTTGGAGAGGTTT
AGTAGCACATTTAGCCCCATATAGATGTTATGCCCACCCTCTGAAGTATC
CCATTTATTCCGTACCTACTGCGACCACATGTCTGATCACTCACATCTGT
ATCTTCATATTACCCCGATATATTTCTTCCCCCTCTTTTTGTATTATGCC
TACTTAAAGATACATCGCCCACTCCTCTCGATTTATCGACCCCCCTGCGC
CCCACCATTTAATTTCCCCCCTTGGCCGCCATTGTCCCCCCCCCCTGTTT
TCCCTCTCCTTCTTTTCCCGCCCACCACCTCCCATTCTCCCTCCT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGAAAAACGTACAAGTGAGATCAGACCCTCTTTA
GCTGTTTTGAATGTTCCCCTTTATGTGGTGACACATTCTCAACTCTTCTA
GGAGAAAAAAAAATATCAGCAGGCAATAAGCAAAGGGAATCCAGGACTCC
AGCAGGGCAAGGTCATAGAGTCTTCACTGGGATGAGTGTAGGGAAGAAAA
GTATTCCCTACCTCCCTCTCTTCCTTCCTCTTTCCCCTCCACATCTTCCT
TCTGTTCATTTATCCCTTCCTTTCAGAGTTGGGGGATGAACACAGTGTCT
TATACATGTTATTTTACGAGCTCCCCGCACCAAGCTACATCTCCTTCCTC
AGAAAAGGGTGCGACTTCTGAATGATAGAAAACAGGTATGACGCTTCATA
ATAACGGCCCTTAAGGTGACATCATTTTTGCCTCTGCTTCCCATGAACAT
GCTGCTTGATCCACCCCATCTGCTTCGCTCAATGTGGTATGCTCTGTTGT
AGGGACCATGTCCATCCCTTGACCTTATTTTCTCTGTGAACTAGCTCTCT
AGGTCAGGCTACCACCTTAATTGCCTGAATATTACCTGTTATTCCCCCTC
TGCCTCCGGATGCTTGACGCACATTTCCCTCCCCTGTAAATTCTCCCTTT
TCTCCGCAATCTTCCTCACATCGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_m06.g1 MSMg01no074_m06.g1 CHROMAT_FILE:
MSMg01no074_m06.g1 PHD_FILE: MSMg01no074_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:14 2005
         (236 letters)



>mm_chr2_94349990_94350624
          Length = 635

 Score =  410 bits (212), Expect = e-119
 Identities = 230/236 (97%), Gaps = 1/236 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgtggtgacacattctcaactcttctaggagaaaaaaaaatatcagcaggcaataag 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 201 ttatgtggtgacacattctcaactcttctaggagaaaaaaaaa-atcagcaggtaataag 259

                                                                       
Query: 61  caaagggaatccaggactccagcagggcaaggtcatagagtcttcactgggatgagtgta 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 260 caaagggaatccaggactccagcagggtaaggtcatagagtcttcactgggatgagtgta 319

                                                                       
Query: 121 gggaagaaaagtattccctacctccctctcttccttcctctttcccctccacatcttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 320 gggaagaaaagtattccctacctccctctcttccttcctctttcccctccatatcttcct 379

                                                                   
Query: 181 tctgttcatttatcccttcctttcagagttgggggatgaacacagtgtcttataca 236
           ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctcttcatctatcccttcctttcagagttgggggatgaacacagtgtcttataca 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 635
Length adjustment: 9
Effective length of query: 227
Effective length of database: 626
Effective search space:   142102
Effective search space used:   142102
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)