ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATCCGCGGAA
TTCTCTTATAAAAAATCCGTTTCCACACAGTCCAGGCCATACTTTCTGTT
GATTTGCATCAATCACTACAATCCATGTGCAAAGATGTAGATAGATTCCT
GCCACAAAGTGGTCAGAAAAATGACTTAGATGGAATGTTGCTGCAGAGTG
GTCAGCACAATGATGTAGATAGGTACCATTGCTGATGGATCCCTGCTGCA
CAGCGGTCAACACAATGATCAATCACTGTGAAGCTGGATATATGACTGTT
GCAAGGTACCTTGTAGAGACAGAAGTACCATTTGGTTAATATATACACAG
TAAAGGAAAGGGACCTTTGTAACTTTAAGGCAGGAGGAAACATCTTATTT
TATTGGAAGGGTGCAATGACCAGCAAGATATTTTGATTGAGTTCCCAAAT
AAATGCATGTTCATGTAAGTTGTATTTTCTGATGCCTAATAATTTTGTAT
TCAAATGTTCTAATTTGTAGATTAGATATATAAGTATCAGCAGAAGGTCT
ATTTTTTCTTTCACTCATTTTAACGGATTGTCTTGTAATTTCCTTTTCCA
AATGGCTTGTATTACATCTAGGTGACCATGGTGTTAGGTTTTAAAAAGGA
GAGCCAAGAGACAGCTCAGTGTTGGAAAACACTTGCTGCCCAACCTTAAG
GCCTGAATTTAATCCTGGG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCACAGTGGCTGCTTCTAATAGTTACTCC
TCTTTCCCTGAGAGCTGCCTCTTTAGTCAAAGTCCTCGAGAGGAGGGTAA
ATTGACTTAATTTTTTGCTCTTCATTTTTTATATTATCCTTTATATCTTT
ATATTATCCTTTGTATCTTTACATTTTATATTATCCTTTGTGTCTTTATA
TTTTAGCTTCCTTTCTTTTTTTCTTTTTATATTTCTTAAGTTACTTATTT
TTCTGCGCGCGTCTTCTTTTTCCTTTCTCTCTGTTTCTGATATGCCTTCC
TGGTACTCCTACAAAGTCGCTGCCCTTCCTTAACAGCTGGTCCCACACAA
ACCCAGCAACAATTACCAGACCCACTGCGTAAGAAAGCATACCTCTCAGA
GACTTACCTTAATTTCTTTATACTTACTGGTACCACCGTTCCTCAGCTGA
AGAGTTCTGAATCCACGCAGTTGAATCCTTCTCAGCAGTCTGTTTTGCAG
GAACCTTTATTAACACCGCTCCCCAGCTGAAGAGTTCTGAATCCACGCCG
GATCCTTCTCAGCAGTCTGGTTTACGGGAACCTTTATTAACCGCTCCTTT
CCCGCGATGCAGTTCTGAATCCTCCCTGTAGCAGGGGGTCTTCGCTCGTG
CCTGAAGATGTTTCTN

Query= MSMg01no075_a21.b1 MSMg01no075_a21.b1 CHROMAT_FILE:
MSMg01no075_a21.b1 PHD_FILE: MSMg01no075_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:37 2005
         (593 letters)



>mm_chr2_16947968_16948961
          Length = 994

 Score = 1122 bits (580), Expect = 0.0
 Identities = 589/592 (99%), Gaps = 1/592 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattctcttat-aaaaaatccgtttccacacagtccaggccatactttctgttgattt 61
           ||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 794 ggaattctcttataaaaaaataagtttccacacagtccaggccatactttctgttgattt 735

                                                                       
Query: 62  gcatcaatcactacaatccatgtgcaaagatgtagatagattcctgccacaaagtggtca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gcatcaatcactacaatccatgtgcaaagatgtagatagattcctgccacaaagtggtca 675

                                                                       
Query: 122 gaaaaatgacttagatggaatgttgctgcagagtggtcagcacaatgatgtagataggta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gaaaaatgacttagatggaatgttgctgcagagtggtcagcacaatgatgtagataggta 615

                                                                       
Query: 182 ccattgctgatggatccctgctgcacagcggtcaacacaatgatcaatcactgtgaagct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ccattgctgatggatccctgctgcacagcggtcaacacaatgatcaatcactgtgaagct 555

                                                                       
Query: 242 ggatatatgactgttgcaaggtaccttgtagagacagaagtaccatttggttaatatata 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggatatatgactgttgcaaggtaccttgtagagacagaagtaccatttggttaatatata 495

                                                                       
Query: 302 cacagtaaaggaaagggacctttgtaactttaaggcaggaggaaacatcttattttattg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cacagtaaaggaaagggacctttgtaactttaaggcaggaggaaacatcttattttattg 435

                                                                       
Query: 362 gaagggtgcaatgaccagcaagatattttgattgagttcccaaataaatgcatgttcatg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaagggtgcaatgaccagcaagatattttgattgagttcccaaataaatgcatgttcatg 375

                                                                       
Query: 422 taagttgtattttctgatgcctaataattttgtattcaaatgttctaatttgtagattag 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 taagttgtattttctgatgcctaataattttgtattcaaatgttctaatttgtagattag 315

                                                                       
Query: 482 atatataagtatcagcagaaggtctattttttctttcactcattttaacggattgtcttg 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atatataagtatcagcagaaggtctattttttctttcactcattttaacggattgtcttg 255

                                                               
Query: 542 taatttccttttccaaatggcttgtattacatctaggtgaccatggtgttag 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taatttccttttccaaatggcttgtattacatctaggtgaccatggtgttag 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space:   573672
Effective search space used:   573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)