BAC Information

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BAC

Clone NameMSMg01-075B12
Chromosome2 (Build37)
Map Location 8,679,222 - 8,679,708
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672230
Downstream geneLOC100040710, LOC100040548, LOC100040566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075B12.T7 (MSMg01no075_b12.b1)MSMg01-075B12.TJ (MSMg01no075_b12.g1)
ACCAG297993AG297994
length684686
length of high quality
(start - end)
490 (58 - 547)384 (72 - 455)
definitionCHROMAT_FILE: MSMg01no075_b12.b1 PHD_FILE: MSMg01no075_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:40 2005CHROMAT_FILE: MSMg01no075_b12.g1 PHD_FILE: MSMg01no075_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAACTANACAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCAGATCATCACGCCTGGCAGCATGCACCTTTGCC
CTATAAACCAGCTCATTGGTCCAACTCTGTTTTGTTGTCGTTTCTTTTCT
TAGTTTGTCGTGCAATGTATTATCATCAAATATTCAGGCATCTGACAATG
ATGTATTTAATTCTAATTGTCAGCCAGTGTATGCCAACTCAAGGAGAAGC
AGAGTAGAGAAAAACTGATCCAAATCTATGCCATTTGTTGCCTATGGTGG
AGCAACCTCGGAAGCTGCCTGAGGGAATTTAATAGTCTTGCTTGCAGATG
GTCTCAGTTCTACCCTAGCTTTAAAACATCACAAGTGGTATCATTCAGCA
ACTGAATCCCTCACTATAATTTATTCTTCTATGAGAAATATGCATAACTC
ACTATAGGAGATGTTAGTGCTCTGTGTGGTTATTTAAGTAAAATTTGAAG
CTACTGTGCTGAGACAATACAGTATTTATAAAAACTGTGCCCTCAATAAT
CTATCAGTAACCTCTTGAAAGTGCATGCTTACAGAAGAGTGACACATAAC
ACATGTCTAAAATCCATCTAGCAAATCATTGTCTCATTAGTACAAACTTG
ACTGTGTATCTGCTCATTGATCCTAGTGAAAAAA
TGCATCTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAAAGAAACC
CTGTCTCGAAAAACAAAACAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGA
GAGAAAGAGAGAGAGAGAGAGAGACTTTGCATTTTCACCCAGTCCACCTG
CTGATACTGCTGGTTTTCTTTTTTAAGTTCTTCCCCACCTCAAATATCTT
GAAGGTTATGCCCTGTGTTTTCTTCTAAAAGCTTCGGTGTTTCAGGCTTT
AAATTAAGGTCTTTGATCTGTTTTCAATTGATTTTTGTACACAGTGAAAG
ATAAGAATCTAATTTCATTCTTCTGCAGGGAGAAATCCAGCACTTCTGGT
GGCATTTGTTGAATAGGTTATCTTTTCTTCTAACGTATGTGGCTGCCTCT
CTTATCAAAAGCTAACTGGGCATAGCCTTACCATTTGATTTCCTACTTCT
CTGTTCAATCCCATTGGACTACCTGTCTATTCTTATGCTGGAAGTCCGGT
CTTTCTCCTCATCACTGTATAGTTTCGTCAGGTCAGGAACACTACTCCCC
TCTAAAGCAAATGAAGTTTAACACCTTTTCTGGAAAACGCCTAGCCTTAA
ACTCGCCTACACACGCGCTCCTGCCCAACCCCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_b12.b1 MSMg01no075_b12.b1 CHROMAT_FILE:
MSMg01no075_b12.b1 PHD_FILE: MSMg01no075_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:40 2005
         (490 letters)



>mm_chr2_8679019_8679908
          Length = 890

 Score =  895 bits (463), Expect = 0.0
 Identities = 481/487 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagatcatcacgcctggcagcatgcacctttgccctataaaccagctcattggt 63
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattcagatcatcaggcctggcagcatgcacctttgccctataaaccaactcattggt 263

                                                                       
Query: 64  ccaactctgttttgttgtcgtttcttttcttagtttgtcgtgcaatgtattatcatcaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaactctgttttgttgtcgtttcttttcttagtttgtcgtgcaatgtattatcatcaaa 323

                                                                       
Query: 124 tattcaggcatctgacaatgatgtatttaattctaattgtcagccagtgtatgccaactc 183
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 324 tattcaggcatctgacaatggtctatttaattctaattgtcagccagtgtatgccaactc 383

                                                                       
Query: 184 aaggagaagcagagtagagaaaaactgatccaaatctatgccatttgttgcctatggtgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaggagaagcagagtagagaaaaactgatccaaatctatgccatttgttgcctatggtgg 443

                                                                       
Query: 244 agcaacctcggaagctgcctgagggaatttaatagtcttgcttgcagatggtctcagttc 303
           ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 agcaacctcagaagctgcctgagggaatttagtagtcttgcttgcagatggtctcagttc 503

                                                                       
Query: 304 taccctagctttaaaacatcacaagtggtatcattcagcaactgaatccctcactataat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taccctagctttaaaacatcacaagtggtatcattcagcaactgaatccctcactataat 563

                                                                       
Query: 364 ttattcttctatgagaaatatgcataactcactataggagatgttagtgctctgtgtggt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttattcttctatgagaaatatgcataactcactataggagatgttagtgctctgtgtggt 623

                                                                       
Query: 424 tatttaagtaaaatttgaagctactgtgctgagacaatacagtatttataaaaactgtgc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tatttaagtaaaatttgaagctactgtgctgagacaatacagtatttataaaaactgtgc 683

                  
Query: 484 cctcaat 490
           |||||||
Sbjct: 684 cctcaat 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)