Query= MSMg01no075_c04.b1 MSMg01no075_c04.b1 CHROMAT_FILE:
MSMg01no075_c04.b1 PHD_FILE: MSMg01no075_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:43 2005
(231 letters)
>mm_chr2_72645829_72646459
Length = 631
Score = 402 bits (208), Expect = e-117
Identities = 226/232 (97%), Gaps = 1/232 (0%)
Strand = Plus / Minus
Query: 1 agaaaagaggagagaggtcagagagcctcgtttctgttttgttttgttctgttttggttt 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 503 agaaaagaggagagaggtcagagaacctcgtttctgttttgttttgttctgttttggttt 444
Query: 61 tgttc-tttttttcccccaactatcttcagctaaaaagacagaatgctatggtgccatat 119
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 443 tgttcttttttttcccccaactatcttcagctaaaaagacagagtgctatggtgccatat 384
Query: 120 tttggggctatgtatgttcccccaaaacagaattttcttgttctacacctaccccaacac 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 383 tttggggctatgtatgttcccccaaaacagaattttcttgttctacacctacaccaacac 324
Query: 180 aatcaatatcttaatattgttaatataatgaattactatgggtactttgggt 231
|| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaccaatatcttgatattgttaatataatgaattactatgggtactttgggt 272
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space: 138084
Effective search space used: 138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no075_c04.g1 MSMg01no075_c04.g1 CHROMAT_FILE:
MSMg01no075_c04.g1 PHD_FILE: MSMg01no075_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:43 2005
(302 letters)
>mm_chr2_72531960_72532661
Length = 702
Score = 540 bits (279), Expect = e-158
Identities = 297/303 (98%), Gaps = 2/303 (0%)
Strand = Plus / Plus
Query: 1 catgcaatttctgctttacagataggtgactagaggaagatcccaaacactcggaatttc 60
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 catgcaatttccgctttacagataggtgactagaggaaggtcccaaacactcggaatttc 260
Query: 61 tatatgtttgaagaaacttcatgaaatgctccattttatctctgatgattattctttgtt 120
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tatatgtttgaagaaacttcatggaatgctccattttatctctgacgattattctttgtt 320
Query: 121 ctggaagctccattgctcgacagtaaatataagtgactcaccttctgtcaaaatgctatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggaagctccattgctcgacagtaaatataagtgactcaccttctgtcaaaatgctatt 380
Query: 181 agcctgtagtatctaactctaacagcatgggaga-acgtttaggagcttctaattccttt 239
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 381 agcctgtagtatctaactctaacagcatggg-gacacgtttaggagcttctaattccttt 439
Query: 240 gtgtctttatttacttatttcaaactttacttaattcatcattttagtcatcattctggt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtgtctttatttacttatttcaaactttacttaattcatcattttagtcatcattctggt 499
Query: 300 ctc 302
|||
Sbjct: 500 ctc 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
