BAC Information

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BAC

Clone NameMSMg01-075C15
Chromosome2 (Build37)
Map Location 155,717,729 - 155,873,695
singlet/doubletdoublet
Overlap gene2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4
Upstream geneEif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik
Downstream geneSpag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075C15.T7 (MSMg01no075_c15.b1)MSMg01-075C15.TJ (MSMg01no075_c15.g1)
ACCAG298047AG298048
length766697
length of high quality
(start - end)		141 (81 - 221)590 (79 - 668)
definitionCHROMAT_FILE: MSMg01no075_c15.b1 PHD_FILE: MSMg01no075_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:45 2005CHROMAT_FILE: MSMg01no075_c15.g1 PHD_FILE: MSMg01no075_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,717,729 - 155,717,869)(155,873,140 - 155,873,695)
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATGACTGGGCG
GAATTCTTCATTTATTCCAACACCCTGGGNCTGTTAATACACCTGCCCAC
TGAGGTTTAAAAGGCACAGATTTTTCTTCAGATCATAAACTTTTAACTAT
ATCAACATGAGGTGAGGTTGTTGGGGTTTCACAGAACAGCTTGTTCTATA
GCCATTGTAAGACAATGAGCAGCTCAATGGGCCGCTGGGCTCAAAAGGTC
ATACATACAAAATGAAGGAACTCTCAGGCCGGAGAGACGGCTCAGTGCCT
AAGGGTACTCACCGACTGCTTTTCTTTTTGTCCTGAGTCCAATTCCCAGT
AACCACATGGTGGTTCTTATCCCCCCCCCCCCGGATCTGATTCTCTCTTC
TGGGTGCGCCAAGATAGACCCCCCACATACAAAATCATCATGAGTAGGAC
CCTGATTCTCCCCCTTTCCCTCTCTTTGCCCTACATTAAAACTCTTAACC
CTTACCCTCTTGCTTCACCCTGCTCCACCCTCCCCCGTTCTTTTTTATAT
CCCATATCTATCTGCCTTTTACTCTTGCTTTTTTTCCACCTTTCACCTCC
CCCTCTCTCCCCCCCACCCTTCACCCTTCTTCACCCACCGCTCTCACTTT
TCCTTCCTCTCTCATTCCCTCCTTTTTTCCGACAACCTCTTTTCTTTGCC
TCTTCCCCCCCCCTCCCTTTTCTTCTCATTTCTCTCATCCTCTTCTATCC
CACTCTATTCGTTTTT

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGCGAGCTGAATGAGCCTGTC
GTGCCTAACCTCCTCTCGCTGCTCTAACCTTTCTCATCCCAGTACTTCTT
GTTCGAATTTCATGAGACTCGGCTTCATCTCCAAGACTTGCTGCTGGAGA
TAACTGTGAGTGGGAAAGCAGATTCAAGTCAGGAAAGGGAGGTATCGAGC
TGGGCATTTGGGTGACTGAGACAGGAAAATCGCCATGAGTTCAAGGCCCA
GCTAGGGCTATAGACTGAGAGTCTTTAAGGTGGACAGAGAGAAAGATGCC
AAAGCAGCAGGACTTAACCCTTCTCTCCCCAGGCTTTCCACTCGCAGACT
CTCCCGTTTATGGCCACCAGGACAGGGACTTTCAGGATGGACTTGGGGAT
GGCCTTGGACCAGCCAGGTATTAAACCCCTCCTCTCTATTTATATGAACA
AATTAACTGAGTTCTGGCCAGTGGACTAACTTCGAAGACAGCCGTCTCTT
GTGAATGCTCACCTTTTTTGTATGGTGGTTCTCCCTGCTCCAACCCCAGT
CATTGTCCAACATCCTGGATCTGTGTCCCTTAGATGTCTCCTCACTCTCT
GTCCTCTTCCTCTGTCCTTAGATGGGCACTTCCACCAAAAGTGGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_c15.b1 MSMg01no075_c15.b1 CHROMAT_FILE:
MSMg01no075_c15.b1 PHD_FILE: MSMg01no075_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:45 2005
         (141 letters)



>mm_chr2_155717529_155718069
          Length = 541

 Score =  265 bits (137), Expect = 8e-76
 Identities = 140/141 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttaatacacctgcccactgaggtttaaaaggcacagatttttcttcagatcataaac 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctgttaatacacctgcccactgaggtttaaaaggcacagattttttttcagatcataaac 260

                                                                       
Query: 61  ttttaactatatcaacatgaggtgaggttgttggggtttcacagaacagcttgttctata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaactatatcaacatgaggtgaggttgttggggtttcacagaacagcttgttctata 320

                                
Query: 121 gccattgtaagacaatgagca 141
           |||||||||||||||||||||
Sbjct: 321 gccattgtaagacaatgagca 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no075_c15.g1 MSMg01no075_c15.g1 CHROMAT_FILE:
MSMg01no075_c15.g1 PHD_FILE: MSMg01no075_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:45 2005
         (590 letters)



>mm_chr2_155872706_155873695
          Length = 990

 Score = 1044 bits (540), Expect = 0.0
 Identities = 552/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 35  ctctcgctgctctaacctttctcatcccagtacttcttgttcgaatttcatgagactcgg 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 ctctcgctgctctaacctttctcatcccagtacttcttgttcgaatttcatgagactcgg 931

                                                                       
Query: 95  cttcatctccaagacttgctgctggagataactgtgagtgggaaagcagattcaagtcag 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 cttcatctccaagacttgctgctggagataactgtgagtgggaaagcagattcaagtcag 871

                                                                       
Query: 155 gaaagggaggtatcgagctgggcatttgggtgactgagacaggaaaatcgccatgagttc 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gaaagggaggtatcgagctgggcatttgggtgactgagacaggaaaatcgccatgagttc 811

                                                                       
Query: 215 aaggcccagctagggctatagactgagagtctttaaggtggacagagagaaagatgccaa 274
           |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 810 aaggcccagctagggctatagactgagagtcaaaaaggtggacagagagaaagatgccaa 751

                                                                       
Query: 275 agcagcaggacttaacccttctctccccaggctttccactcgcagactctcccgtttatg 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 agcagcaggacttaacccttctctccccaggctttccactcgcagactctcccgtttatg 691

                                                                       
Query: 335 gccaccaggacagggactttcaggatggacttggggatggccttggaccagccaggtatt 394
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gccaccaggatagggactttcaggatggacttggggatggccttggaccagccaggtatt 631

                                                                       
Query: 395 aaacccctcctctctatttatatgaacaaattaactgagttctggccagtggactaactt 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aaacccctcctctctatttatatgaacaaattaactgagttctggccagtggactaactt 571

                                                                       
Query: 455 cgaagacagccgtctcttgtgaatgctcaccttttttgtatggtggttctccctgctcca 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cgaagacagccgtctcttgtgaatgctcaccttttttgtatggtggttctccctgctcca 511

                                                                       
Query: 515 accccagtcattgtccaacatcctggatctgtgtcccttagatgtctcctcactctctgt 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 accccagtcattgtccaacatcctggatctgtgtcccttagatgtctcctcactctctgt 451

                           
Query: 575 cctcttcctctgtcct 590
           ||||||||||||||||
Sbjct: 450 cctcttcctctgtcct 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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