BAC Information

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BAC

Clone NameMSMg01-075I08
Chromosome2 (Build37)
Map Location 74,193,254 - 74,193,787
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
Downstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075I08.T7 (MSMg01no075_i08.b1)MSMg01-075I08.TJ (MSMg01no075_i08.g1)
ACCAG298316AG298317
length711702
length of high quality
(start - end)
80 (160 - 239)533 (69 - 601)
definitionCHROMAT_FILE: MSMg01no075_i08.b1 PHD_FILE: MSMg01no075_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:12 2005CHROMAT_FILE: MSMg01no075_i08.g1 PHD_FILE: MSMg01no075_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGCATCCGCGGAA
TTCTTTGGTTACTCTTCAACATTATACCCGTTTTGTTTAGTAGGTTCGAA
AGCGAGGAGCATAGCTTAAGTGCTGATGAGACAGACTATCTCCCACAGCT
GAGCGGCACGGGACGGCTCGCCACCCCAAAATTCCAGGGTGTGAGCGTTT
CCCCTGGTTTGCCTTTGCGTGTTGTGTGGCTAAGGACACATCGCAGGTCA
GATTATTACACTGCGTTTCTGGCTCTGAAAATCCCACCAAGCTGAATGTG
GGCACTAAACATGTCAGATCTCTTCTCCCGAAGACCCTGAAGCATACATT
AAGTAGTATACACATGCGAACCTACCGTTTTATGGCCATTTTCAATCCAG
CCCATTGACATTTATGATGTCCCCCCCAGAACTCTTGCAGCAACTACACT
AACGGAACAGGTGCTCTATCCTGGTTACCATTACCATGTAGGTTTCAATC
TCGCCTGCTACTTTCACCCTGCTTCTAACAACTTTGCATCAAATCCCTTC
CAACATCCACCTTGTCCTACCCCCTTACGTGCCCCCGCCCTGTACCTCTG
CGTTATTTATCCACCCCTACTTATCTATTTTCAACCCACTACATTATATG
GCTTCTCCACAGCCTGTTACCGCATTTTATTCCGGATCCCCTTCTCCCCA
CCTTATTCCCG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTATTCTTTTGCAAATATGACCGTTTTCTTT
TTTCTTTTGGACAAAACAAACGTGTAGAAAGATATCTGAGTGACTTTTTT
AAAAAAAGTGGAAGTAAATTAGAATTGTTTAAAAATATTTCTTTATGAGA
GTGGGACTATATGAATGTGGGCTCAAGCAACTCAAAATTTATGAAAATAT
GGGTGTGGATCTTTCTAGTTTATTTTGCACTTAAAGAAAGATGGTCTGTG
AATACTTTAAAAGCAAAAAATTACTCCCAAAGTTGTTAGTATACTAACTT
TAAAATATTGACTATCCATTACAATAAGTCCTCAAATATCTCTACTTTCA
ATGATTTGCAAGCCTTTGTCCTTTACCGGCTATAATAGTTTTTATTTTAT
GGGATATTTCTTTTTAAATATTTTATAATTCTGACTGGGCTATCCCCAAT
TAGTCCAAATCATTAAATACTTTTATCTTAGGCTAAAATGTTTATTGCAT
AGCTTATTTTCAATGTTTTCTAGCATGTAGACTTTTCTTTTTGATGTAAG
AAATTCATCTGGTACAGAAATTATTTAGAGGCGCTAAGGGAATAGATTAC
GGAGAAAGTATCAGAGGTTAATAATGAAAAAAAACAGGAAAGACTACCTT
GC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_i08.g1 MSMg01no075_i08.g1 CHROMAT_FILE:
MSMg01no075_i08.g1 PHD_FILE: MSMg01no075_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:12 2005
         (533 letters)



>mm_chr2_74193051_74193987
          Length = 937

 Score =  967 bits (500), Expect = 0.0
 Identities = 524/534 (98%), Gaps = 4/534 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   attcttttgcaaatatgaccgttttcttttttcttttggacaaaacaaacgtgtagaaag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 attcttttgcaaatatgaccgttttcttttttcttttggacaaaacaaacgtgtagaaag 678

                                                                       
Query: 64  atatctgagtgactttttt----aaaaaaagtggaagtaaattagaattgtttaaaaata 119
           || ||||||||||||||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 677 atctctgagtgacttttttaaaaaaaaaaagtggaagtaaattagaattgtttaaaaata 618

                                                                       
Query: 120 tttctttatgagagtgggactatatgaatgtgggctcaagcaactcaaaatttatgaaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tttctttatgagagtgggactatatgaatgtgggctcaagcaactcaaaatttatgaaaa 558

                                                                       
Query: 180 tatgggtgtggatctttctagtttattttgcacttaaagaaagatggtctgtgaatactt 239
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 557 tatgggtgtggatttttctagtttattttgtacttaaagaaagatggtctgtgaatactt 498

                                                                       
Query: 240 taaaagcaaaaaattactcccaaagttgttagtatactaactttaaaatattgactatcc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taaaagcaaaaaattactcccaaagttgttagtatactaactttaaaatattgactatcc 438

                                                                       
Query: 300 attacaataagtcctcaaatatctctactttcaatgatttgcaagcctttgtcctttacc 359
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 437 attacaataagtcttcaaatatctctactttcaatgatttgcaagcctttgtcctttact 378

                                                                       
Query: 360 ggctataatagtttttattttatgggatatttctttttaaatattttataattctgactg 419
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 377 ggctataatagtttttattttatgggatatttcttttaaaatattttataattctgactg 318

                                                                       
Query: 420 ggctatccccaattagtccaaatcattaaatacttttatcttaggctaaaatgtttattg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggctatccccaattagtccaaatcattaaatacttttatcttaggctaaaatgtttattg 258

                                                                 
Query: 480 catagcttattttcaatgttttctagcatgtagacttttctttttgatgtaaga 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 catagcttattttcaatgttttctagcatgtagacttttctttttgatgtaaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 937
Length adjustment: 10
Effective length of query: 523
Effective length of database: 927
Effective search space:   484821
Effective search space used:   484821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)