BAC Information

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BAC

Clone NameMSMg01-075J03
Chromosome2 (Build37)
Map Location 84,613,536 - 84,701,107
singlet/doubletdoublet
Overlap geneSerping1, Ube2l6, Smtnl1, Timm10, Slc43a1
Upstream geneItgav, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4
Downstream geneRtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075J03.T7 (MSMg01no075_j03.b1)MSMg01-075J03.TJ (MSMg01no075_j03.g1)
ACCAG298354AG298355
length680681
length of high quality
(start - end)		490 (40 - 529)560 (73 - 632)
definitionCHROMAT_FILE: MSMg01no075_j03.b1 PHD_FILE: MSMg01no075_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:15 2005CHROMAT_FILE: MSMg01no075_j03.g1 PHD_FILE: MSMg01no075_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,700,622 - 84,701,107)(84,613,536 - 84,614,095)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGGACATCCAGGACTATATAGAGAATCCCTGTCTCAAAAGGGATTTGGGG
GTGAGACACCAAGTTACTAGAGGTGACTCGGATTTGCAGTGATCCACACT
TGAGATGATACTAGGTTGGAGTGGGACTTAGGCAGGCAAGCTTGGGAAAC
GAGATGGGGGACATGTGACAGGTGAAGGCAAAAGGATTACAGATACCCTG
GATATGAGTGTTCAGAGAAAAGACATCAAAGGTGTCTGAATGGCATAGCT
GGGGCAGTGTAGAAGGAAGGAGAGAAGCTGCCTTCTGCTGAGATGGCTCC
AGGAAGCATTAGCCAACCACGTACCCAGAGCCTTCCCATGAGGGGATATT
GCATGATGTAATCCATGCAGAAAAGTATGTCAACAGTGCCTTGAAGTTGG
AATGAGGAGAGGAGGGAATCAAGGTTGCTCATTGAGATACTACAAGAAAT
CTCTACAAGATGGGTGGTGAGGAAGGGCACAACCCAGCTCCGGTGTCTAA
ACATTCATCATAAGAGACTCCCATTTTCTTTAGGAAAGACATTATAACTT
TGGCATCTCTGTGAATATGGTGTGGACTACCTGTAATTCTTGTATTTCTG
CTAAGAAAAATGAACAGCCAGTTTCCATGA

CCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAGGGGGCTGTCCTGGAGAATCTGTGG
GTAGCTGAGCAGCTGGCTGGCTGTGCTGGCTGAAGAACTCGTTGGCTACT
TTACCCATGGTGTCATTTGTTATTGTGATGGCTACACTGGTTGTTGGCCA
GGTAGAGGGCAGTACTGTAGGCTCTGGGGGACTCCAGGAGTCATCTCTTT
CAGGGAAGCTCTCTCTGCTTTTCGCTTGAGCCTCCAGTGGATCCTGGGTG
CTGTGGCTGGTAGCTTCGGGATCTGAGAAGGCTCTATCCTGTGGTTCAAG
AAGCAGTGTTTCATTTCCTGGTGAGCCACAGTTCCCTCAACCATTCCAAG
CAAGAAGAGATGATTGGAACATATCATCCCAGTTGCTCCTGGTATAACCT
GGCAGGTGAAACCTTGGACCAACCCCACAATTCCTTCAGAAATAGGCAAT
GCTGGGGGAATTCTCTGCAGGAGATACGAGGCAATTCTGATTTTGGTTAT
CAGTTATCTGTGTCCAGTGACCGCCGTGCAAGTAGCTGTTTTCTTGTAAA
TATCAATTTGTTTTGACTCACTTGCCAGACTAGTGCAATTGTGAGTCTTA
TTTTAGGACTGTGGATTTTCCAAGAGTGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_j03.b1 MSMg01no075_j03.b1 CHROMAT_FILE:
MSMg01no075_j03.b1 PHD_FILE: MSMg01no075_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:15 2005
         (490 letters)



>mm_chr2_84700372_84701261
          Length = 890

 Score =  932 bits (482), Expect = 0.0
 Identities = 485/486 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggacatccaggactatatagagaatccctgtctcaaaagggatttgggggtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gaattccaggacatccaggactatatagagaatccctgtctcaaaagggatttgggggtg 677

                                                                       
Query: 65  agacaccaagttactagaggtgactcggatttgcagtgatccacacttgagatgatacta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agacaccaagttactagaggtgactcggatttgcagtgatccacacttgagatgatacta 617

                                                                       
Query: 125 ggttggagtgggacttaggcaggcaagcttgggaaacgagatgggggacatgtgacaggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggttggagtgggacttaggcaggcaagcttgggaaacgagatgggggacatgtgacaggt 557

                                                                       
Query: 185 gaaggcaaaaggattacagataccctggatatgagtgttcagagaaaagacatcaaaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaaggcaaaaggattacagataccctggatatgagtgttcagagaaaagacatcaaaggt 497

                                                                       
Query: 245 gtctgaatggcatagctggggcagtgtagaaggaaggagagaagctgccttctgctgaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtctgaatggcatagctggggcagtgtagaaggaaggagagaagctgccttctgctgaga 437

                                                                       
Query: 305 tggctccaggaagcattagccaaccacgtacccagagccttcccatgaggggatattgca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tggctccaggaagcattagccaaccacgtacccagagccttcccatgaggggatattgca 377

                                                                       
Query: 365 tgatgtaatccatgcagaaaagtatgtcaacagtgccttgaagttggaatgaggagagga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgatgtaatccatgcagaaaagtatgtcaacagtgccttgaagttggaatgaggagagga 317

                                                                       
Query: 425 gggaatcaaggttgctcattgagatactacaagaaatctctacaagatgggtggtgagga 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 316 gggaatcaaggttgctcattgagatactacaagaaatctctacaagatgggtggggagga 257

                 
Query: 485 agggca 490
           ||||||
Sbjct: 256 agggca 251


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no075_j03.g1 MSMg01no075_j03.g1 CHROMAT_FILE:
MSMg01no075_j03.g1 PHD_FILE: MSMg01no075_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:16 2005
         (560 letters)



>mm_chr2_84613336_84614295
          Length = 960

 Score = 1075 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagggggctgtcctggagaatctgtgggtagctgagcagctggctggctgtgctggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagggggctgtcctggagaatctgtgggtagctgagcagctggctggctgtgctggctg 260

                                                                       
Query: 61  aagaactcgttggctactttacccatggtgtcatttgttattgtgatggctacactggtt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggactcgttggctactttacccatggtgtcatttgttattgtgatggctacactggtt 320

                                                                       
Query: 121 gttggccaggtagagggcagtactgtaggctctgggggactccaggagtcatctctttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttggccaggtagagggcagtactgtaggctctgggggactccaggagtcatctctttca 380

                                                                       
Query: 181 gggaagctctctctgcttttcgcttgagcctccagtggatcctgggtgctgtggctggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaagctctctctgcttttcgcttgagcctccagtggatcctgggtgctgtggctggta 440

                                                                       
Query: 241 gcttcgggatctgagaaggctctatcctgtggttcaagaagcagtgtttcatttcctggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttcgggatctgagaaggctctatcctgtggttcaagaagcagtgtttcatttcctggt 500

                                                                       
Query: 301 gagccacagttccctcaaccattccaagcaagaagagatgattggaacatatcatcccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagccacagttccctcaaccattccaagcaagaagagatgattggaacatatcatcccag 560

                                                                       
Query: 361 ttgctcctggtataacctggcaggtgaaaccttggaccaaccccacaattccttcagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgctcctggtataacctggcaggtgaaaccttggaccaaccccacaattccttcagaaa 620

                                                                       
Query: 421 taggcaatgctgggggaattctctgcaggagatacgaggcaattctgattttggttatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggcaatgctgggggaattctctgcaggagatacgaggcaattctgattttggttatca 680

                                                                       
Query: 481 gttatctgtgtccagtgaccgccgtgcaagtagctgttttcttgtaaatatcaatttgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttatctgtgtccagtgaccgccgtgcaagtagctgttttcttgtaaatatcaatttgtt 740

                               
Query: 541 ttgactcacttgccagacta 560
           ||||||||||||||||||||
Sbjct: 741 ttgactcacttgccagacta 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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