BAC Information

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BAC

Clone NameMSMg01-075K01
Chromosome2 (Build37)
Map Location 162,713,743 - 162,714,274
singlet/doubletsinglet
Overlap genenone
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696
Downstream geneLOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075K01.T7 (MSMg01no075_k01.b1)MSMg01-075K01.TJ (MSMg01no075_k01.g1)
ACCAG298398AG298399
length7011,853
length of high quality
(start - end)
537 (52 - 588)---
definitionCHROMAT_FILE: MSMg01no075_k01.b1 PHD_FILE: MSMg01no075_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:20 2005CHROMAT_FILE: MSMg01no075_k01.g1 PHD_FILE: MSMg01no075_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAATCCG
CGGAATTCCTGGGTCCTCATCTGGGTGTGAGGCTGTATATGGGCACAGGG
TCCTCCTCATCTGAGCGTGAGGCTGTATACGGGCACGGAACACGTGCTCT
TGGCCCCTCAGCTTCCTGGCTGCTTGCGGAGAGGCACATTCACACCAAAG
TCAGGAAAGGGCCTCTAAATCTGCTTTCTTTAGCGTTAAGGGATTTTCCT
GGATATGGGCAACACTGAGAAGGAGAGGTTGCTGGGAGTCTGGCTCTGTC
CTTTTGCCTGCAGGATTGGATGGACCCTCTAGGGCCCCAGGAGTCGTCTG
AATGGATTCAGGTGTGTTTGGAATTCCCGCAACAGCAGCATCCTTAGTTC
TAACATGCACACATCTATCTATTGAAATGAAAGCTTTTCATCTTTCTGTT
CGGCTCTTGTTGCAGGACGGTGGGTCACAGGACAGGATGTTGCAGCTCCT
CTTGACCAGGTGAGGAAGCTGAGACTCAGAGGAGGAGACCACCATGTTCC
ACATATCCTACTACAGTTGACAGAGTAGGGCTTGAATCCCACAGCGGGCT
CCTTGCACGGTGCTCCTAGTGACTTTTTTTTGCAGAATTTTAGTCTAATT
TGTACGTGCATGCGCGCGTGTGTGTGTGAGTGTGTGTGTGAGTGTGCCTT
C
TCTACTCACACCCCACTNCTCTCTTCTATCCTTATCTGCTACACTTACTG
TGTCCTACTACTTCGGACCGCCGGCCCGCCTCTCTCTCCAACAATATACA
GACGCTGCACGAGCGCACACNCATTACCTCACTACTCCTCNTCACATACT
CTCCTCACCGTGTTGGNCTGTGCTCNCGCAGCTCATCATGAGATGCCAGC
AGTGTGACGTTCGCGCGACCTGCGTCGTTGTCTAGACAGACGTGACAGTA
CGTAGATCGCACCGTCATTATCTATGCATCTAATTGTGGTCAGTGCGTCT
AATTGCACGAGTGAGTGTGCGTGCTGTTATATCATTCATAATTAGTGGCT
GATGCGTCGTATGTAGATGCAGCTATGTGTTGCACCTCGTGTATATATAT
ACTTTCTGCAGATAATCTCGTTGCGGCTTGTTGGAGTGAGGAGTAATGAG
GAAGTGCGAGAAATGCATGAATATGTTGAGCAGTNACGCAGGATCGTATA
TATCATCTACGTCTACATTATTCTTCANGTAGTCGTGTGCGAATATATAA
CACACTATATACTCAGCGATACGTACATACAATATATACTCGAGTAGAAT
NGCATACTCATCGCGCACTACACGGCTATATATCTTAATATTCGCCAGTA
GTGTCATATAACACGCACGCGATCATCATATGCGAGCGTGATGATACANA
NACTATCGATAATATACTNATACGAGAAGATTACAGATGCATCATTCGTC
CACACCATATATATTATTCGCACGCTCGCACGAAATTGTAATGCGCGTTC
GAGACAGCACGACAGCACATATATACCGTGGAGATAGGNGAATATTAAAG
AGGGTGTGCGACACGCACCGCGACGATATATTGACACGGTAGGTATACAT
GTNCACAGCGATACGCTGAGTCACACCGAGTATGTAANCACGAANACTCA
CGTCGCAGCTNGTACGGAGCACTATGATTATACTACTACTGATGATAACG
TGCTCATCAAGAGTGACGCGACGTGCGTGGTTAGTTGTAGNTGAGAGACT
CAGTCGGTGTCACATACAGCACAAGTGGGCCACAGATACACACGATGATG
TATACGTACATACACACGATCCATGGTTGGCTGATCACTACTACGCTATG
ACATGATGTACGTTGTGGTGTGAACTGTAACTATACATAGCATATGCGCA
TCATGAGTATTCGAGCGTTATCCATCCACGCAATACGTNCTGTCAAGTGA
CANCCACAGGCGTGTGTATTATACGAACGAATACACACGAATGGGTGTGT
ACGCTGAGACCGGTGTGATATCGCGGCTGACGCATTACGTGCTGTAGAAG
TCACTTNATTGAACAGATCGAGGTGGACGGAGGGTGGATTATAGCGCAGC
GGGTGCATCGCGTGCAATATAATATATATTATACAAACACATCACTGTCT
GTTCAGCGTACATACACAGACGGCGCGAGCGCGCCACTAACATAATACTC
ANTATCCTACTGNTNTAGTAGAACGCAGGATGTCACGTAGTCTACACACT
TCGCTGGTAAGTGTGCGCACGTCGATGGTACGTGGCGCTGTGTCATGTGT
CTCACTCATTCTGCGATCTTTTATGCTCAGCCTCGCGACACTCCTAGTGT
GTCTCTACGACGCTCTATGATCTGGCGCCTCCACGCTATCCTCACAATAT
ATATCATAANCACNTACCGAACACACGGCACAGCTGTCGCCGGACTATCT
ATNATTATACGTACGTTACGACGTGCGTATGACTNCTATGATGGGGCGAG
GGTANATATCTAAACGATATGACCGATAGATCGAGTCTCGTATGATCATC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_k01.b1 MSMg01no075_k01.b1 CHROMAT_FILE:
MSMg01no075_k01.b1 PHD_FILE: MSMg01no075_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:20 2005
         (537 letters)



>mm_chr2_162713542_162714474
          Length = 933

 Score =  982 bits (508), Expect = 0.0
 Identities = 528/536 (98%), Gaps = 4/536 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattcctgggtcctcatctgggtgtgaggctgtatatgggcacagggtcctcctcatct 61
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 733 gaattcctgggtcctcatctgggtgtgaggctgtatatgggcacaggg---tcctcatct 677

                                                                       
Query: 62  gagcgtgaggctgtatacgggcacggaacacgtgctcttggcccctcagcttcctggctg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gagcgtgaggctgtatacgggcacggaacacgtgctcttggcccctcagcttcctggctg 617

                                                                       
Query: 122 cttgcggagaggcacattcacaccaaagtcaggaaagggcctctaaatctgctttcttta 181
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 616 cttgcggagaggcacattcacaccaaagtcaggaaagggcctctaaatcttctttcttta 557

                                                                       
Query: 182 gcgttaagggattttcctggatatgggcaacactgagaaggagaggttgctgggagtctg 241
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gcg-gaagggattttcctggatatgggcaacactgagaaggagaggttgctgggagtctg 498

                                                                       
Query: 242 gctctgtccttttgcctgcaggattggatggaccctctagggccccaggagtcgtctgaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gctctgtccttttgcctgcaggattggatggaccctctagggccccaggagtcgtctgaa 438

                                                                       
Query: 302 tggattcaggtgtgtttggaattcccgcaacagcagcatccttagttctaacatgcacac 361
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 437 tggattcaggtgtgtttggaattcccgcaagagcagcatccttagttctaacatgcacac 378

                                                                       
Query: 362 atctatctattgaaatgaaagcttttcatctttctgttcggctcttgttgcaggacggtg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atctatctattgaaatgaaagcttttcatctttctgttcggctcttgttgcaggacggtg 318

                                                                       
Query: 422 ggtcacaggacaggatgttgcagctcctcttgaccaggtgaggaagctgagactcagagg 481
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 317 ggtcacaggacaggatgttgcagctcctattgaccaggtgaggaagctgagactcagagg 258

                                                                   
Query: 482 aggagaccaccatgttccacatatcctactacagttgacagagtagggcttgaatc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aggagaccaccatgttccacatatcctactacagttgacagagtagggcttgaatc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 933
Length adjustment: 10
Effective length of query: 527
Effective length of database: 923
Effective search space:   486421
Effective search space used:   486421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)