NNGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAACTTTTCAGCTGGGGAACGAGAGTACCAGTGAGTACAG
CTTTACGAGGTAAGTCTGATCTTGAACTTTCTAAGGAAATTCAAGACAGT
CTATCAGAAGTAAAGTGGAAAATGGCTTTACAAGTTATATTTGGCCTTGA
ATTTTTTCTGGTGTTAGGAGCCCTTTTGTTCCTTTTCACATGTTATCAAG
TGATTAAGATAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCA
GAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGAAAATATGGTACACA
AAATAAGTATACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTTA
GGTTAGGTAGGAATACCTGGAGAGAGATTAGAAGAAAAAGAGGAAAAAGG
GAAAAGAAGAAAGATCAATTAGCGGAGGTCTCTAGGAAAAGGAGCCTGTG
CTCATCGCTGGATGGGCTCGGGGAGCCAGCTCTTAGTAGCTCTGAAGCAG
GTGAAGAATCCTCCTCTGAGGAAACAGACTGGGAGGAAGAAGCAGCTCAT
TATGAGAAAAAAGGGTACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAG
GAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCA
GCCGGTN

NNNTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAACTATAGCTTTGAGTGTTTAC
ACACAGTGTAGTGTTGTTAACGCTCTTCCTTAAGGAATCATTCTTAAAAA
TTGGACCTTGGATTAAAAAAAAGACAAAACAAAACAAAACAAACAAACAA
CAACACCTTTGTGATATTCACAGTGAAAATTTTATTTTCCATTATCTGGT
GTCAATCAAGGATGCCCACACATCAGCTCTAAAGGTGGCTATTGGGAGCT
CTGTCATTGCTTTCAAAGTCAGCACTTCCCCCTGAACATAGTGTGATCAA
ACTGAGTTTCTTAGGCTCCCAGAGACCCCACTCTGTTAATCATATTTACA
TGATAGTTGTAAAATAAAATACTGAGGCCAATAAGACAAAAAACAGACGA
AGAAGGCCTTAAGAAGACAAGGAACAAAGAGACCTACAAACTATGGTATG
TTTGTGTGCCTGTATTACTGAACGACAATGTATACAAAACAATAAAGAAA
GATGAGAGTCTCAGCTAGTTAACTTTCATTTTATGTGGCTAGACAAAGAC
TACTAACTTGTCAACTAGTTTTTTTTTTTTCCTTATGAAGTCATACATAA
TTCTTATAGTTCCTCTTACATGGCGGGACTCATTCTAAACATTGGAAATT
TAN

Query= MSMg01no075_k03.g1 MSMg01no075_k03.g1 CHROMAT_FILE:
MSMg01no075_k03.g1 PHD_FILE: MSMg01no075_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:20 2005
         (592 letters)



>mm_chr2_53244429_53245418
          Length = 990

 Score = 1096 bits (567), Expect = 0.0
 Identities = 586/593 (98%), Gaps = 4/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactatagctttgagtgtttacacacagtgtagtgttgttaacgctcttccttaaggaa 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caactatagctttgagtgttcacacacagtgtagtgttgttaacgctcttccttaaggaa 260

                                                                       
Query: 61  tcattcttaaaaattggaccttggattaaaaaaaagacaaaacaaaacaaaacaaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattcttaaaaattggaccttggattaaaaaaaagacaaaacaaaacaaaacaaacaaa 320

                                                                       
Query: 121 caacaacacctttgtgatattcacagtgaaaattttattttccattatctggtgtcaatc 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacaacacctttgtgataatcacagtgaaaattttattttccattatctggtgtcaatc 380

                                                                       
Query: 181 aaggatgcccacacatcagctctaaaggtggctattgggagctctgtcattgctttcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggatgcccacacatcagctctaaaggtggctattgggagctctgtcattgctttcaaa 440

                                                                       
Query: 241 gtcagcacttccccctgaacatagtgtgatcaaactgagtttcttaggctcccagagacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcagcacttccccctgaacatagtgtgatcaaactgagtttcttaggctcccagagacc 500

                                                                       
Query: 301 ccactctgttaatcatatttacatgatagttgtaaaataaaatactgaggccaataagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccactctgttaatcatatttacatgatagttgtaaaataaaatactgaggccaataagac 560

                                                                       
Query: 361 aaaaaacagacgaagaaggccttaagaagacaaggaacaaagagacctacaaactatggt 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaacagatgaagaaggccttaagaagacaaggaacaaagagacctacaaactatggt 620

                                                                       
Query: 421 atgtttgtgtgcctgtattactgaacgacaatgtatacaaaacaataaagaaagatgaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtttgtgtgcctgtattactgaacgacaatgtatacaaaacaataaagaaagatgaga 680

                                                                       
Query: 481 gtctcagctagttaactttcattttatgtggctagacaaagactactaacttg-tcaact 539
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 681 gtctcagctagttaactttcattttatgtggctagacaaagactactaa-ttggtcaact 739

                                                                
Query: 540 agttttttttttttccttatgaagtcatacataattcttatagttcctcttac 592
           ||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agtttttttttt--ccttatgaagtcatacataattcttatagttcctcttac 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 990
Length adjustment: 10
Effective length of query: 582
Effective length of database: 980
Effective search space:   570360
Effective search space used:   570360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)