BAC Information

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BAC

Clone NameMSMg01-076J18
Chromosome2 (Build37)
Map Location 82,012,698 - 82,012,818
singlet/doubletsinglet
Overlap geneZfp804a
Upstream geneLOC100040704
Downstream geneLOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076J18.T7 (MSMg01no076_j18.b1)MSMg01-076J18.TJ (MSMg01no076_j18.g1)
ACCAG299144AG299145
length711730
length of high quality
(start - end)
121 (65 - 185)---
definitionCHROMAT_FILE: MSMg01no076_j18.b1 PHD_FILE: MSMg01no076_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:39 2005CHROMAT_FILE: MSMg01no076_j18.g1 PHD_FILE: MSMg01no076_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXCTATTCCCGAGAGGATCCGCGGA
ATTCCACTCTTGCACTCCTTTTGTATAAATTTAAAAGAGATGCATATAAC
TTAATTCATAGAAAGTTCAGGCTCCAGGATTATATCTTATATTTTTTATT
TCAGCACACATTTTGAATTTGCTTTATACTTGGTTAAAAGTCATTCCAAT
TCTGAAGTTGGCTAAGATTAATTGAAAAATTATGCTTGTTTGGCAAAACA
AATACGCATGTCTATGCTATTGTACAAGATTATTTCTGCTCTCTGATGTT
TGATAGGACTTGAAAACACCTATTCTCAACATTTTACTTATTATTTATGA
GCATCATGGGCATTTGCCTGCCTTCACTATCAACACACTTACAAGGCCGT
CGGTTAGTGCTGCCACTGGTCCCATTCTAACTCCAAGTTTTATTAGATCC
CTCTCCCCCACCGATTGTCTTTCTTCCCCCATCTACCCCGCGTTTCTATC
CCTGCACGACCACTCTCTTTCACCCCGCAGTTCACGCTGTTTTCACCCTC
ACCACGGTTCGTACACTACTGCTGACTCTCTATCTGCTCTCATTGCCTCA
CTTATCCCCATGTCCCGATTATATCTATCACTCCCCCCCCCACCATTCCC
GTACTATCTGTCTACACCCCCTTTCACGCCATTTCCGCTCCACTCTTTCT
CCGCCTACCGC
GATGAAGTGGGAGGCNGGGGGAGNCTGTTCCGAGGGGGGGNGGAGGGAGA
ATTTCCCAAAAAGGCGAGANCGNAACGGTGACCCCCAACCGGGACGCGCG
TTGTCGCCGCGCCGTTCTCNCAGGATCGCTTCCTTTTTGCCTTTTTAGCC
CAAACCCCCAACATCGTCGTTTCGTCGGTTGTGCTTGTCACGTCTATCGC
TCAACTACTTCGTGCCTCGTGTATAACTATTATTGTGAAGAAATTAGGGA
GGAGGCCGGTGGGGCGCCTAGAGGTTGTTCGTTCCCGCCTGCGTGTTTTT
TTTTTTAGACATAGCGATCGCTGCGGTGCATAGTAAATCGTTGCTGGGGG
TCGCGCGTCGCGGTTAGCTGTAGTTGTAGTATACCGAAAAGACGTTGTTA
AGGTATCCCCCCCGCGGGTTTAAGTATACAGTCATTAATTTTGTGCACTA
TATGATCCCATCACTGGATATGTTGGTAGATTCGTACACCTTTTTTCACT
ATACTGACGGTGTAATGTGGGATTTTCGATAGAGAGAACTTTTCCGCTAT
CCATGCTATTTCGACGAAAATACAAGTGTTTCTGCAGAGAATTGCATATG
GTAGCTAATTCGGCGTTTCGGTGGGGTTTAACTTGGTTGGTCGTTGACCG
GGGTCGGTGATTTATGTTAACGATTAGGTGTATGGAGTTTACGTCATTGA
TATCGTTTCTGCGAGTTACAGAGGAGTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_j18.b1 MSMg01no076_j18.b1 CHROMAT_FILE:
MSMg01no076_j18.b1 PHD_FILE: MSMg01no076_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:39 2005
         (121 letters)



>mm_chr2_82012498_82013018
          Length = 521

 Score =  211 bits (109), Expect = 1e-59
 Identities = 118/121 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccttttgtataaatttaaaagagatgcatataacttaattcatagaaagttcaggctc 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccttttgtagaaatttaaaagagatgcatataacttaattcatagaaagttcaggctc 262

                                                                       
Query: 61  caggattatatcttatattttttatttcagcacacattttgaatttgctttatacttggt 120
           |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 261 caggattatatcttatattttttatttcagtacacattttgaatttgttttatacttggt 202

            
Query: 121 t 121
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)