BAC Information

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BAC

Clone NameMSMg01-076P13
Chromosome2 (Build37)
Map Location 174,143,892 - 174,144,134
singlet/doubletsinglet
Overlap geneGnas
Upstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas
Downstream geneTh1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3, LOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076P13.T7 (MSMg01no076_p13.b1)MSMg01-076P13.TJ (MSMg01no076_p13.g1)
ACCAG299420AG299421
length717691
length of high quality
(start - end)
387 (41 - 427)244 (55 - 298)
definitionCHROMAT_FILE: MSMg01no076_p13.b1 PHD_FILE: MSMg01no076_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:08 2005CHROMAT_FILE: MSMg01no076_p13.g1 PHD_FILE: MSMg01no076_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAGCAGTACACAATCCAGTTATGACAGGGACAGGCAGCAAAGACTGGAG
AGGCGCTTGAAGCAGGACTTAGCATGCAGGAAGCTGCTGACATCTTTGTC
TTTAAGAAAATGTAATTTAAGTGTAACTCACCAAGTGGTGATAGTTCATT
CCCTTAGTCCCAGCACTTGGGAGGCAGAGGCAGGCAGATCTCTGAGGCCA
GCCTGCTCTATAGAGCAAGTTTCAGCCAGGGAATCACAGCCAGGGAATCA
CAGGAACACAGAGAAACCCTGTCTTGAAAATCAAAAAGCAAACAAACAAA
CAAACAAACACGAAAAAAAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG
GAAGGAAGGAACGAAGGAAGGAAGGAAGGAAAGAATACTCGTACTCATGC
ACTCTTGTACTCGTGTAATTGGACAACAATTCTTTTGTTCGTCTGTCCGT
GATTTCCTATACTCAATACAAATCTCTGGTTTCTTGGATCTCGTCACTAA
GACTGTGATGCTTACTTGTTCATTTTACTCTTCCCTACTCCAGTTACACC
CTTTTCCCTGTTTCGTCCCTTTTTTCTCTGTGCTTTCCCTTACCGTATTT
CAGCGTCATTGTTTTTTTGTTACCCTCCTTTCTTTTTCTATCCCCTCAAT
GCCCTTCCTTGCCTGCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACTTTTATTTCTTTTCTAGACATGCCAGAGTGCTTTTGGGAGCTTT
GACCAGGCCAAGCAACTGCTTGAGATCAGAGGATTAGAGATAAGTCCAGA
GGTCGGGAAGAAATATAAGGACCTTCCTGAGTTTTGCTTGACATGAATAT
ATAGACTCAACACTTAGGTCTCTGACTCCTCCCCAGCACTATAGCATAGC
CTCTGCCTGAAGCGACTCCTGTCTCTGGGCCTGTTCAGTTCTAAGGCATG
TACTTGGTAATGGCATATCTGACCTAGCCACTGACCTTAAAGAAAGCCCA
ATTTTCATCAGGGGGTATGTGGCAGACCACTTGACAAGTCTTCCAGCCAC
CGGATATCGGTCCCTGCCAGAATGACTGGCCCGAGGACTAAAATCTCACC
TTGTCCTACAGAAGGAAGGGAGAAGCCTTTCTGGCTCTTTTTTCAGTGTC
CTCCTGGTATAATAATGCCTAATGGCGTATACTTGGCCATGTGTGCCCAG
TCTGCAGGTAGCGATTGACATTCCCTCATTCAGGTCCTCCGTCATTCATA
TCTGTTAGTTGCTTGCTCCCTGCCCCCAGCTATCCCTGCCTCTTCCCTTT
TCTTCCCCCTTTCCTTACTAAAACACTCTTCTCCTTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_p13.g1 MSMg01no076_p13.g1 CHROMAT_FILE:
MSMg01no076_p13.g1 PHD_FILE: MSMg01no076_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:08 2005
         (244 letters)



>mm_chr2_174143692_174144334
          Length = 643

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%), Gaps = 1/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttttatttcttttctagacatgccagagtgcttttgggagctttgaccaggccaagca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 acttttatttcttttctagacatgccagagtgcttttgggagctttgagcaggccaagca 384

                                                                       
Query: 61  actgcttgagatcagaggattagagataagtccagaggtcgggaagaaatataaggacct 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 383 actgcttgagatcagaggattagagataagtccagaggt-gggaagaaatataaggacct 325

                                                                       
Query: 121 tcctgagttttgcttgacatgaatatatagactcaacacttaggtctctgactcctcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcctgagttttgcttgacatgaatatatagactcaacacttaggtctctgactcctcccc 265

                                                                       
Query: 181 agcactatagcatagcctctgcctgaagcgactcctgtctctgggcctgttcagttctaa 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcactataacatagcctctgcctgaagcgactcctgtctctgggcctgttcagttctaa 205

               
Query: 241 ggca 244
           ||||
Sbjct: 204 ggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space:   148990
Effective search space used:   148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)