Query= MSMg01no078_i21.b1 MSMg01no078_i21.b1 CHROMAT_FILE:
MSMg01no078_i21.b1 PHD_FILE: MSMg01no078_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:54 2005
(545 letters)
>mm_chr2_25726131_25727069
Length = 939
Score = 949 bits (491), Expect = 0.0
Identities = 526/541 (97%), Gaps = 6/541 (1%)
Strand = Plus / Minus
Query: 5 gaattccacacacgtcctgagcagccgtgaagctccttcacccatcctatcctgtgcagc 64
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaatcccacacacgttctgagcagccgtgaagctccttcacccatcctatcctgtgcagc 680
Query: 65 ctgctcagaacatcttcctttcctggcttttgctatccctctctcccacagcaggctatt 124
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 679 ctgctcagaacatctttctttcctggcttttgctatccctctctcccacggcaggctatt 620
Query: 125 tcctccagcaagctcagggactcattacctagaggatggcaactcttcttggctgcaaag 184
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 619 tcctccagcaagctcagggactcatcacctagaggatggcaactcttcttggttgcaaag 560
Query: 185 ggcccctttcctagactctcagggaagccgaggttggaaggatgcagtctccaccatcag 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 559 ggcccctttcctagactctcagggaagtcgaggttggaaggatgcagtctccaccatcag 500
Query: 245 cctcagtcttcaggatcagctggcaggatggctctcattgtttttgcatggtggctggcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cctcagtcttcaggatcagctggcaggatggctctcattgtttttgcatggtggctggcc 440
Query: 305 tgccaggaggtcacctcatctggtatggggtgggcctctcttatggcatttccacttccc 364
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 439 tgccaggaggtcacctcatctggtatagggtgggcctctcttatggcatttccacttccc 380
Query: 365 agtatatctccaggctacttagattctctaggaaaacagcctagccccagatgtggcttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agtatatctccaggctacttagattctctaggaaaacagcctagccccagatgtggcttg 320
Query: 425 acagtcagatgccatcttcagagctggtaccatggggcctggcatagcacattcctcatt 484
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 319 acagtcagatgccatcttcagagctggtaccatg------ggcatagcacattcctcatt 266
Query: 485 agtgacttccagcttcttggctctggcttcttatgacacctatgacctctgatggtggta 544
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 agtgacttccagcttcttggctctggcttcttatgacacctatgacctctaatggtggta 206
Query: 545 t 545
|
Sbjct: 205 t 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 939
Length adjustment: 10
Effective length of query: 535
Effective length of database: 929
Effective search space: 497015
Effective search space used: 497015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_i21.g1 MSMg01no078_i21.g1 CHROMAT_FILE:
MSMg01no078_i21.g1 PHD_FILE: MSMg01no078_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:55 2005
(485 letters)
>mm_chr2_25537035_25537919
Length = 885
Score = 891 bits (461), Expect = 0.0
Identities = 476/481 (98%)
Strand = Plus / Plus
Query: 1 tcgagcctgaagacggggcaggtggtttttcactgggggcaaattatagactctggaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tcgagcctgaagacggggcaggtggtttttcactgggggcaaattatagaccctggaatg 260
Query: 61 gcagaggctgaggtgcctggctaggcaagagctgttgaataggtcaggacattattgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagaggctgaggtgcctggctaggcaagagctgttgaataggtcaggacattattgagg 320
Query: 121 cagccactggactatgagacttcaaccatccatgccttctgagcaggaaggcaactgagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagccactggactatgagacttcaaccatccatgccttctgagcaggaaggcaactgagt 380
Query: 181 gctgcacagtaggagagcacagatggcatctacctagtgggttagcatccacaggctgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgcacagtaggagagcacagatggcatctacctagtgggttagcatccacaggctgcc 440
Query: 241 tagcaggaagacacagaatgcacagttggtctagtggagaggtcagtatccatgagcttc 300
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 441 tagcaggaagacacagaatgcacagttggtctagtggggaggtcactatccatgagcttc 500
Query: 301 ctagcagggagttacagccagggctctagctcttcttttcctgcccatggctttagctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagcagggagttacagccagggctctagctcttcttttcctgcccatggctttagctgc 560
Query: 361 ttgctgggagtgggcgtgggggtgatggcggtggcatggaactctcaaaggcttgagtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgctgggagtgggcgtgggggtgatggcggtggcatggaactctcaaaggcttgagtct 620
Query: 421 gtgggccctcattccaaatgggacatcaggtctggaaatggtggaatgatgtcatctact 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 621 gtgggccctcattccaaatgggatatcaggtctggaaatggtggaatgatgtcatttact 680
Query: 481 a 481
|
Sbjct: 681 a 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
