BAC Information

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BAC

Clone NameMSMg01-078J12
Chromosome2 (Build37)
Map Location 103,088,372 - 103,088,723
singlet/doubletsinglet
Overlap genenone
Upstream geneTrim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
Downstream geneEhf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078J12.T7 (MSMg01no078_j12.b1)MSMg01-078J12.TJ (MSMg01no078_j12.g1)
ACCAG299892AG299893
length688718
length of high quality
(start - end)
356 (43 - 398)218 (72 - 289)
definitionCHROMAT_FILE: MSMg01no078_j12.b1 PHD_FILE: MSMg01no078_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:58 2005CHROMAT_FILE: MSMg01no078_j12.g1 PHD_FILE: MSMg01no078_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAAT
TCTTCTCCTAACCTCGGTCCTGGGAAGCAGTTCAGTGACCCAAATCAAAG
CAACCATTTGCAGGCAGAGGACTGGGAAAGACTTGAAACTGTTGAATATT
AACTAAGTTATCTGTTCACATAAATCTTTCATGCAGAGTAAGTGTTCTGA
AAAGATGTGTGGGCATGTGTGCTTGCATGTGCTTGAAGATATGTGACCTT
TCTTATAGTTAGCTATTGTATTGTTGTTGTTATTATTAGTATTTCATTAT
CTCATTTTGAGCTACTCCGATCCAAGTTATAGGACTATGGCTTATTTTGA
AGTGTTTATGAAAGGCTAGGTTCTGGAGAAAAACCTGAGTTTCTTTTGTG
TACAGCTAGGATGCCAACGAGAAAGGTCATCACAGACTTTGGAACTAGAG
AGAGCTGCATCTCAAATCTGCTGGACCACCTGTTGTCATTAAGCATTGGA
CAAGCCACTGCAGTCTTGCGGTCCTCATCTTTAGTGATGATAACTCTTAG
CTTTGCATAGTTTCTTAAGCTTACTTAGAAAGTTTTTATCAGCAATTGCC
TTGTTAAAAACTCTAAATCTCACCGTATCTCTACCTACTGCTCTTCACAT
GTACACTGTGAATACTAACCAATATTTATACCTGTTAA
ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGAAGAGGGAAAGAGTCTCTTTGGAGCA
TCTCTAGGAGACATATTAAATGTTGATGTATGGCATTGGTTAATGCTTAC
TGAAATGAGCTAATTGCTTCTATTGTGGAATAAGATAACTAGCGACTGCT
GCCATATAATTAACTGCAGCAACTGCAGAAAAGAGGGGATTTAAAGGACA
TACTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTNCCCCCCCC
CCCCCATATTTCTTCTTTTTCCTTTACCCCACTTTCTCTTCTACCCAAGT
CAAATTTTTTTTATCCCCCCCCCCATAACCACTTCTCTCTCTCCTCTTCT
CCTTCTTTTTATTTCCCCCCCTTCTACCCCCTTTCTTCTCTTCACACTCT
TCTCTTCTTTCCTCATCCTCTTTCTTCCTCCTACTTCCCCCCACCTTCTC
TAATTCTCTTATATCCTTTCTCACTTAATCTTTCACTATACATCTCTTTC
TCCATTCCTATTTCTACCTCATTTTCTTCCCTTTCTCTCTCTTCCTCTTC
TTCCTCCCCCTTGCATTCCTCTCCCTTTTCTTTCCTATTATCTCCTCCTC
CACTCTATATCTCTACTTCCTTTTTCTTCCTTCCCCCCATATCCCTCTTC
CTAATCTCTCTAACGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_j12.b1 MSMg01no078_j12.b1 CHROMAT_FILE:
MSMg01no078_j12.b1 PHD_FILE: MSMg01no078_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:58 2005
         (356 letters)



>mm_chr2_103088168_103088923
          Length = 756

 Score =  596 bits (308), Expect = e-175
 Identities = 341/352 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctcctaacctcggtcctgggaagcagttcagtgacccaaatcaaagcaacca 64
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaattcttctccgaatatcggtcctgggaagcagttcagtgacccaaatcaaagcaacca 497

                                                                       
Query: 65  tttgcaggcagaggactgggaaagacttgaaactgttgaatattaactaagttatctgtt 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 496 tttgcaggcagaggactgggaaaaacttgaaactgttgaatattaactaagttatctgtt 437

                                                                       
Query: 125 cacataaatctttcatgcagagtaagtgttctgaaaagatgtgtgggcatgtgtgcttgc 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 436 cacataaatctttcatgcagagtaagtgttctgaaaatatgtgtgggcatgtgtgcttgc 377

                                                                       
Query: 185 atgtgcttgaagatatgtgacctttcttatagttagctattgtattgttgttgttattat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atgtgcttgaagatatgtgacctttcttatagttagctattgtattgttgttgttattat 317

                                                                       
Query: 245 tagtatttcattatctcattttgagctactccgatccaagttataggactatggcttatt 304
           |||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct: 316 tagtatttcattatctcatttttagctactccaagccaagttataggactatggcttatt 257

                                                               
Query: 305 ttgaagtgtttatgaaaggctaggttctggagaaaaacctgagtttcttttg 356
           || |||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 256 ttaaagtgtttatgaaatgctaggttctggagaaaaacctcagtttcttttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)