Query= MSMg01no078_k24.b1 MSMg01no078_k24.b1 CHROMAT_FILE:
MSMg01no078_k24.b1 PHD_FILE: MSMg01no078_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:05 2005
(639 letters)
>mm_chr2_145095613_145096649
Length = 1037
Score = 1091 bits (564), Expect = 0.0
Identities = 620/644 (96%), Gaps = 12/644 (1%)
Strand = Plus / Plus
Query: 5 gaattcattttgctttct--------gcactcattaaaatccacctttattaaaattatt 56
|||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct: 197 gaattcattttgctttctcattaaaatcactcattaaaatccacctt--tcaaaattatt 254
Query: 57 gcacaaatgaagcaccgaccataacaccttaccactttaggtatgtaatctaaggcccat 116
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gcacaaataaagcaccgaccataacaccttaccactttaggtatgtaatctaaggcccat 314
Query: 117 gtaataacacggcttcccatgcccatctgccatattggggattgtttttgtcctatgcat 176
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 315 gtaataacacagcttcccatgcccatccgccatattggggattgtttttgtcctatgcat 374
Query: 177 tctctctctcgttcctgtcacaattgctatgtaatcgtcttgctcaccttgacattcagt 236
||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 375 tctctctcttgttcctgtcacaatttctatgtaatcatcttgctcaccttgacattcagt 434
Query: 237 cttcacttgggggtgtccatgtgttatgtgagcacgagtacacatgcacttgcaggtgtg 296
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 435 cttcacttgggggtgtccatgtcttatgtgagcacgagtacacatgcacttgcaggtgtg 494
Query: 297 cattcaagtgtggatggcagagaataaccttaagggctaagcctcag-atgctgtccatc 355
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 495 cattcaagtgtggatggcagagaataaccttaagggctaagcct-aggatgctgtccatc 553
Query: 356 tttttaatttctctgggacaaagtttctcacaggcctgggccttgtcaagcaggctaggc 415
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 554 tttttaatttctctgggacaaagtttctcacaggcctggaccttgtcaagcaggctaggc 613
Query: 416 cagctggccagtgagcctgggagaccctgatctccttctgtaataggattacaagctcat 475
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 614 cagctggccagtgagcctgggagaccctgatctgcttctgtaataggattacaagctcat 673
Query: 476 gctatcacatacatacatatatacaatgtattgtggttatattcactcctgttactctgt 535
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 674 gctatcacatacatacatatatacaatgtattgtggttatattcactcccgttactctgt 733
Query: 536 tgtatacccttcctttccctcccaacccctcctcctgccatccagtcccttagtggctac 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tgtatacccttcctttccctcccaacccctcctcctgccatccagtcccttagtggctac 793
Query: 596 atttttagagaggaatgacatactgcctctggaaaccattcaaa 639
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 atttttagagaggaatgacatactgcctctggaaaccattcaaa 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1037
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1027
Effective search space: 645983
Effective search space used: 645983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_k24.g1 MSMg01no078_k24.g1 CHROMAT_FILE:
MSMg01no078_k24.g1 PHD_FILE: MSMg01no078_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:05 2005
(239 letters)
>mm_chr2_145209084_145209722
Length = 639
Score = 453 bits (234), Expect = e-132
Identities = 237/238 (99%)
Strand = Plus / Minus
Query: 1 tctatcagactgattttcatgaaaaggtgtgtcaggctggttcaccctgtgcggctgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tctatcagactgattttcatgaaaaggtgtgtcaggctggttcaccctgtgcggctgcac 379
Query: 61 acctggaacacctgtccgactgtaactagaggaatatttctcatagtccagagcggagtc 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acccggaacacctgtccgactgtaactagaggaatatttctcatagtccagagcggagtc 319
Query: 121 tccctgccagcaccggccgtggctttcagcccattctctcctagcaaagctgcttagtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tccctgccagcaccggccgtggctttcagcccattctctcctagcaaagctgcttagtcc 259
Query: 181 ttaaatcgcaaggagttggttttcagccaggcagcagcgggggtgggagtgggggtgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttaaatcgcaaggagttggttttcagccaggcagcagcgggggtgggagtgggggtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
