Query= MSMg01no079_a11.b1 MSMg01no079_a11.b1 CHROMAT_FILE:
MSMg01no079_a11.b1 PHD_FILE: MSMg01no079_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:32 2005
(555 letters)
>mm_chr2_82012080_82013034
Length = 955
Score = 1050 bits (543), Expect = 0.0
Identities = 549/551 (99%)
Strand = Plus / Minus
Query: 5 gaattccactcctgcactccttttgtagaaatttaaaagagatgcatataacttaattca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gaattccactcctgcactccttttgtagaaatttaaaagagatgcatataacttaattca 696
Query: 65 tagaaagttcaggctccaggattatatcttatattttttatttcagtacacattttgaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tagaaagttcaggctccaggattatatcttatattttttatttcagtacacattttgaat 636
Query: 125 ttgttttatacttggttaaaagtcatttcaattttgaagttgggtaagattaattgaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttgttttatacttggttaaaagtcatttcaattttgaagttgggtaagattaattgaaaa 576
Query: 185 attatgtttgtttggtaaaacaaataggcaagtctatgctattgtagaagattatttctg 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gttatgtttgtttggtaaaacaaataggcaagtctatgctattgtagaagattatttctg 516
Query: 245 ttctctgatgtttgataggatttgaaaacacctattctcaacattttacttattatttat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttctctgatgtttgataggatttgaaaacacctattctcaacattttacttattatttat 456
Query: 305 gagcaacatgggtatttggttgacttcactaataacatacttacaaggtcgttggttagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gagcaacatgggtatttggttgacttcactaataacatacttacaaggtcgttggttagt 396
Query: 365 gttgttacaggggctattctaaatccaagcaacagagatcattctcccataaagattgcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gttgttacaggggctattctaaatccaagcaacagagatcattctcccataaagattgcc 336
Query: 425 ttttttcccttaattaatttggttttatacaaagtatgaagagtttctttcacaagggag 484
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 335 ttttttcccttaattaatttggttttatagaaagtatgaagagtttctttcacaagggag 276
Query: 485 ttcagggtggcctacaaataactatggagtgcagactagtgctgattctctagcagtttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttcagggtggcctacaaataactatggagtgcagactagtgctgattctctagcagtttt 216
Query: 545 catgtctcact 555
|||||||||||
Sbjct: 215 catgtctcact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_a11.g1 MSMg01no079_a11.g1 CHROMAT_FILE:
MSMg01no079_a11.g1 PHD_FILE: MSMg01no079_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:32 2005
(537 letters)
>mm_chr2_81847418_81848353
Length = 936
Score = 953 bits (493), Expect = 0.0
Identities = 523/533 (98%), Gaps = 1/533 (0%)
Strand = Plus / Plus
Query: 5 gaagcaaaaggcagataatcttcttctgacacttcctttctatatggactgtcatctgat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaagcaaaaggcagataatcttcttctgacacttcctttctatatggactgtcatctgat 264
Query: 65 gttgcagttcacaatcaggtaagtcttccagaagaacggcagtcagcgaagttctacact 124
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 gttgcagttcacaatcagttaagtcttccagaagaacggcagttagcgaagttctacact 324
Query: 125 caagggttccactcaggtgatactttataatttgtgacaaattgatttaaaaatgaaaca 184
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagggtcccactcaggtgaaactttataatttgtgacaaattgatttaaaaatgaaaca 384
Query: 185 acatattcaaattacttaataatatggaaaacaactatttttctcacaaacatcttccat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatattcaaattacttaataatatggaaaacaactatttttctcacaaacatcttccat 444
Query: 245 tatttagtcaatattttaatgagttgaaagtctgtagcttgacatatttcttttatatat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatttagtcaatattttaatgagttgaaagtctgtagcttgacatatttcttttatatat 504
Query: 305 gcacatgaccctgaacacctgagtaattatattttggtcaatttactgaagctgattgta 364
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 gcacatgaccctgaacacctgagtaattatattttggtcaatttactgaagccgattgta 564
Query: 365 atacttgttcatatagaaaacaccacataggatgttagtatcactgcaaacaggatacaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atacttgttcatatagaaaacaccacataggatgttagtatcactgcaaacaggatacaa 624
Query: 425 ttatttgtaccatatagatatcatggaatatgatagtaaaggaactcaacagctaatata 484
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 625 ttatttgtaccgtatagatatcatggaatatgatagtaaagga-ctcaacagctaatgta 683
Query: 485 gttgatataaatgccaagagaataatgttgagaaaaaaatacagtaatcctca 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gttgatataaatgccaagagaataatgttgagaaaaaaatacagtaatcctca 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
