Query= MSMg01no079_d04.b1 MSMg01no079_d04.b1 CHROMAT_FILE:
MSMg01no079_d04.b1 PHD_FILE: MSMg01no079_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:45 2005
(659 letters)
>mm_chr2_90974977_90976037
Length = 1061
Score = 1187 bits (614), Expect = 0.0
Identities = 644/654 (98%), Gaps = 2/654 (0%)
Strand = Plus / Minus
Query: 5 gaattcagagagactattctagaaattcccactagagcaccagactcagccagaggctga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaattcagagagactattctagaaattcccactagagcaccagactcagccagaggctga 799
Query: 65 gaatgaacagagagtcagcaatgggggattaggctctgctcaggggaaagacaatataga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaatgaacagagagtcagcaatgggggattaggctctgctcaggggaaagacaatataga 739
Query: 125 ctggggagagttacccat-aggagcctaggagaccagcctcctgtcagtctagcccagga 183
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctggggagagttaaccataaggagcctaggagaccagcctcctgtcagtctagcccagga 679
Query: 184 ccttgagtccctaccttaggactacctcggacagcacagcagaggatggcattatagcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ccttgagtccctaccttaggactacctcggacagcacagcagaggatggcattatagcct 619
Query: 244 gcaatgatggagcgatttgccaagggctgggtgaagcttggggcctcagagaagtccagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gcaatgatggagcgatttgccaagggctgggtgaagcttggggcctcagagaagtccagg 559
Query: 304 gccttgtatttgggtggctcatatgtgatgcctgttggtgacaagtcttggtaccaagaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gccttgtatttgggtggctcatatgtgatgcctgttggtgacaagtcttggtaccaagaa 499
Query: 364 ggtcaccccaagcgaggctccccctccttccccagattcctcacagtgtgagggagggta 423
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggtcaccccaagtgaggctccccctccttccccagattcctcacagtgtgagggagggta 439
Query: 424 cagcacctggtcttggaataaaaactggctccttggtggcggcagctttgtcactggaac 483
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 438 cagcacctggtcttggaataaagactggctccttggtggcggcagctttgtcactggaac 379
Query: 484 ccaccatgttatggctgaagacccggaagtagtagccattgccgatgataagctctgaca 543
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 378 ccaccatgttatggctgaagacccggaagtagtagccattgccaatgataagctctgata 319
Query: 544 ccacacagtgagtgcgtcggtagtgttccaaaaccgtgaaccactcctggaggat-gtga 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 318 ccacacagtgagtgcgtcggtagtgttccaaaaccgtgaaccactcctggaggatggtga 259
Query: 603 aggaaggtagggctctctgaggaacctctgcctttcttgggtaccccctgtgcc 656
||||||| ||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 258 aggaagggaggactctctgagggacctctgcctttcttgggtaccccctgtgcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1061
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1051
Effective search space: 682099
Effective search space used: 682099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_d04.g1 MSMg01no079_d04.g1 CHROMAT_FILE:
MSMg01no079_d04.g1 PHD_FILE: MSMg01no079_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:45 2005
(614 letters)
>mm_chr2_90890343_90891359
Length = 1017
Score = 1143 bits (591), Expect = 0.0
Identities = 610/617 (98%), Gaps = 3/617 (0%)
Strand = Plus / Plus
Query: 1 tcttgggttcttgtgc-aacactagggcgtgagtaattaaggagtttaacagagaagaca 59
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgggttcttgtgcaaacactaggacgtgagtaattaaggagtttaacagagaagaca 260
Query: 60 aacaaccaaatcatcacacagaaggtatatctgcctggtaagtgctccgaaggggaagct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaccaaatcatcacacagaaggtatatctgcctggtaagtgctccgaaggggaagct 320
Query: 120 cagagactgggaaacagtaagacttgacgagtctttaatggtcagtgaggttttgctgct 179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 cagagactgggaaacagtaagacttgacgagtctttaatggtcagtgagattttgctgct 380
Query: 180 gattcaaagaatgttaatattcactgatattcagtggtgacatagatttataggaggtat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattcaaagaatgttaatattcactgatattcagtggtgacatagatttataggaggtat 440
Query: 240 agaaatctagatgtgggagaagttactgagggtctgagacgctaatcaaagggcccaggt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaatctagatgtgggagaagttactgagggtctgagacgctaatcaaagggcccaggt 500
Query: 300 actgtgtgtgaagaaaaatatggcatgctgacaagatgtggtcagggaccagac--gagt 357
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 501 actgtgtgtgaagaaaaatatggcatgttgacaagatgtggtcagggaccagacttgagt 560
Query: 358 cttcgttctgagaaggctttgtttttgttttcttcttgagacagtgggtattgtaaccac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcgttctgagaaggctttgtttttgttttcttcttgagacagtgggtattgtaaccac 620
Query: 418 atctagcttgggcctgatgtctctggatcctccatgacagattagaagaggtgaatctga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctagcttgggcctgatgtctctggatcctccatgacagattagaagaggtgaatctga 680
Query: 478 ggctgtcgtagagaacatggactttcttattgttctcagagagcacccacatccaccaac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctgtcgtagagaacatggactttcttattgttctcagagagcacccacatccaccaac 740
Query: 538 ctgcttctccttcagcacaactctgtgatcagcgtgaggagactggagctgccaaaggac 597
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 ctgcttctccttcagcacaactctgtgatcagcgtgaggagaccggagctgccaaaggac 800
Query: 598 acttgactatcctctcc 614
|||||||||||||||||
Sbjct: 801 acttgactatcctctcc 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1017
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1007
Effective search space: 608228
Effective search space used: 608228
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
