BAC Information

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BAC

Clone NameMSMg01-079E16
Chromosome2 (Build37)
Map Location 111,407,616 - 111,408,165
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295
Downstream geneLOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079E16.T7 (MSMg01no079_e16.b1)MSMg01-079E16.TJ (MSMg01no079_e16.g1)
ACCAG300405AG300406
length706704
length of high quality
(start - end)
582 (41 - 622)561 (70 - 630)
definitionCHROMAT_FILE: MSMg01no079_e16.b1 PHD_FILE: MSMg01no079_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:53 2005CHROMAT_FILE: MSMg01no079_e16.g1 PHD_FILE: MSMg01no079_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATGGATACCAGTATACTGGAGACTAGAAAGGTCTGATTCGCATGTGTATA
TTTTCTTCTGTATCTTTACTATATGTTAATACATTAACTATGTAACATCT
TTTTAAGCTATTGTAGTACATGGCTCCATTTTTTTGCTAACATTTAAGTT
ATCACCTGAAGGCAAAACATTGTGAGTATCATCATTAAAACAACTGATAA
ACGATGGTCACCAGAATGTGTCACAAAGCAGACATAGCATATTTTACATC
CATAGATGTATAATCCAATAGTGTGCTATGTTCATAGTACTAGAGGAGAG
AATATACAAGGGATTGCATGAGACTTTGTTCTACTTTTCAATGAAAAGGA
TAGTCTGACACAGCTTTGGGAAGAAGTGTACTTGCTTTCTTAAATAGTAA
TTCTTTTCATTTGAGGCACAGTTCTATCATCACTTTCTAAACTTGTGCAG
AACAAACATAGTAACAGAAAAGGTGATAAAGAGCACAAGGGAAAGTGCAA
TAAGTCTCATCGCTACACAAAGAAGATAGGTAACAAAGATATGCTGAGGG
CTGGAGAAATTGTCTTACTCAGAACAAGCAATTAAATATATTATTCAATA
TTAAATGATCTGTCCTTTCAACTTGTATATACCAGTGACATTATGGAGAC
TGATCN
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTTGTGACTTATCAGCTTCTTTATGGCATT
TTTAATATTTTTATTTCTCAGTGTGTAGATGTCTGAATTCACTTGTGACT
TATCAGCTTCTTTGCGGCATTTTTAATGTCTTTATTTCTCAGTGTGTAGA
TGTCTAAATTCACTTATGACTTATCAGCTTCTTTATGGCATTTTTAATAT
CTTTATTTCTCAGTGTGTAGATGGCTGGATTCAGGAGAGGTGTGATGACT
GAGTAAAATACAGCCAGAAACTTGTCAACCCAGGTGATGCTAACTGGCCA
CAGATAGATGAAAATGATGGGCCCAAAGAACAGCAGAACCACTATGATAT
GGGATGTGCATGTAGATAGGGCTTTTGATGAGCCATCTTTAGAGCGATGT
TGAACAGTTAATAGAATGTAAGTATAAGATACAAGCAAGAGGATGAAACA
AGTTGTTGCTAAAATGCCACTGTCAGCATTTATTAGGATTTCCAGAGTAT
CAGTATTCATGCAGGCTAATTTCATCACCAAAGGAATATCACAGAATAAG
CTGTCTATCACTCTAGGTCCACAGAAAGGTAGATCCAAAATCAAGAGCAT
CTGACTAATGGCATGCACAAATCCAACAATCCATGGTATCACAACGAGCC
AGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_e16.b1 MSMg01no079_e16.b1 CHROMAT_FILE:
MSMg01no079_e16.b1 PHD_FILE: MSMg01no079_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:53 2005
         (582 letters)



>mm_chr2_111407235_111408216
          Length = 982

 Score =  971 bits (502), Expect = 0.0
 Identities = 546/578 (94%), Gaps = 28/578 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatggataccagtatactggagactagaaaggtctgattcgcatgtgtatatttt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 gaattcatggataacagtatactggagactagaaaggtctgattcgcatgtgtatatttt 872

                                                                       
Query: 65  cttctgtatctttactatatgttaatacattaactatgtaacatctttttaagctattgt 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 871 cttctgtatctttactatatattaatacattaactatgtaacatctttttaagctattgt 812

                                                                       
Query: 125 agtacatggctccatttttttgctaacatttaagttatcacctgaaggcaaaacattgtg 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 agtacatggctcca-ttttttgctaacatttaagttatcacctgaaggcaaaacattgtg 753

                                                                       
Query: 185 agtatcatcattaaaacaactgataaacgatggtcaccagaatgtgtcacaaagcagaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 agtatcatcattaaaacaactgataaacgatggtcaccagaatgtgtcacaaagcagaca 693

                                                                       
Query: 245 tagcatattttacatccatagatgtataatccaatagtgtgctatgttcatagtactaga 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 692 tagcatattttacatccatagatgtataatccaatagtgtgctatgttcatagta----- 638

                                                                       
Query: 305 ggagagaatatacaagggattgcatgagactttgttctacttttcaatgaaaaggatagt 364
                                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ----------------------catgagactttgttctacttttcaatgaaaaggatagt 600

                                                                       
Query: 365 ctgacacagctttgggaagaagtgtacttgctttcttaaatagtaattcttttcatttga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctgacacagctttgggaagaagtgtacttgctttcttaaatagtaattcttttcatttga 540

                                                                       
Query: 425 ggcacagttctatcatcactttctaaacttgtgcagaacaaacatagtaacagaaaaggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ggcacagttctatcatcactttctaaacttgtgcagaacaaacatagtaacagaaaaggt 480

                                                                       
Query: 485 gataaagagcacaagggaaagtgcaataagtctcatcgctacacaaagaagataggtaac 544
           ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 479 gataaagagcacaagggaaagtgcaataagtctcatccctacacaaagaagaaaggtaac 420

                                                 
Query: 545 aaagatatgctgagggctggagaaattgtcttactcag 582
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aaagatatgctgagggctggagaaattgtcttactcag 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)