BAC Information

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BAC

Clone NameMSMg01-079E18
Chromosome2 (Build37)
Map Location 90,885,366 - 91,071,783
singlet/doubletdoublet
Overlap geneRapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2
Upstream geneOlfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067
Downstream genePacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079E18.T7 (MSMg01no079_e18.b1)MSMg01-079E18.TJ (MSMg01no079_e18.g1)
ACCAG300409AG300410
length737717
length of high quality
(start - end)
279 (38 - 316)176 (66 - 241)
definitionCHROMAT_FILE: MSMg01no079_e18.b1 PHD_FILE: MSMg01no079_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:53 2005CHROMAT_FILE: MSMg01no079_e18.g1 PHD_FILE: MSMg01no079_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,071,509 - 91,071,783)(90,885,366 - 90,885,539)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
ATGTTCCTGCTATTTCCATTTCTCACATATGGAATTATAGACATGTATCA
CCATGCCCACAGTCCCCTTAGGAATGGTCTAAAATGCTAAGGTTTATGTT
CAGTCGCTAAGGTGTTGGCTGTTTAGGAAACTTACCTTATTTGGTTGGTA
ACGGACATTGGAGAGTTGTTCTATAACAATGACTTTATAGTTTTAGAACT
TAAGTTAAAAACTCAATAGACCTCATGAAGCCAAACAGGTTCGTGGTGGA
AAGATAAACTGTTAATAGTAAAGAGACAATTTTTATGATAAAAAAATGTA
AGTCTTAAATTTTTTGGATATAATTTTTTTTCTTTTTCGAATAAAGCCTG
AAAATACCCCAATGGTTTCTATGAGTGCTGTATGGTTTTTGTTGCTGTTT
TGTTTGTTTGGTTTTAGTTTTCTTTTTTTTTTTAAGATTTTATTTATATG
AGTACATGTCTTCAGACACCCCTAAAGTGGACCTCAGATTCCATTACAGA
TCGCTCCCATCTTTTCACTAGTTTTTTCGTGGCTTTGAGAAATTTACCTT
CTAATGTACTCTATGTTTTTTCATTTTGTTTTTTACTTCTGACCATTTTT
CATGTACTCCCTTACTCTTCTTTCCCCGTACCCATTCTTTTACCTCTCCG
TTACTTTCCCCCTTCTTCCCCCCTCCTCTTTTCTCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTACACGACGGGCGGAAGGGGCCCCTTCAAGTCAGCTCCCAGGACCAGA
CTTGCCTTGGCCCGGCAGCAGATGCCAACTTTGCTGCAGCCTGGAAGCCT
TGGGGGCAGGGCAGGCAGGAAGTGAGCAGAGCCCAGGGGAGCCTTCTCTC
CCACTAGACAGTGACCTCCTCGTCTGGAAGGGAGGAAGAACATTTTGGGT
CTGAAGTTAAGTCTGGCCTGGGTGAGTGAACGCAGCCCCCTACCTCCACA
GATGGCTTCATACATTGGGACTAGGAGCTGCCCCAACTGCCGCCGTTCCT
CCATGACCCCGGGCTTTGTGTGACTTCAGCGGCCATCTTGGGTTTCCATA
CCACCTCCCCTGGCACCTTCTCCACCATCAAGTCCGAGGTCCTGGTGAAA
TTCTAGGGTATCGGTCAGGTCCTCCATATTCAACTCTGGGTCCGAGGTCT
GCCTGATGCTCCTCTGGGTCTAGCTCCCCTCCCCTGCCTCTTTCCACTGT
GTTTATTATAGAACAATAAAATCGTTGCACCTGGTGCTTGTGATTCTAAT
CCTTCTTTCTCGTGAAGGATTCTCTGACACGGTCCCCCTTCATGTTTTTT
TTTGTTACTTTTGGGCGACCCCCTGTATTATTTCGCTCTTATGTATCACC
TGGATAACACCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_e18.b1 MSMg01no079_e18.b1 CHROMAT_FILE:
MSMg01no079_e18.b1 PHD_FILE: MSMg01no079_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:53 2005
         (279 letters)



>mm_chr2_91071305_91071983
          Length = 679

 Score =  493 bits (255), Expect = e-144
 Identities = 270/275 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagatgttcctgctatttccatttctcacatatggaattatagacatgtatcac 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaattccagatgtttctgctatttccatttctcacatatggaattatagacatgtatcac 420

                                                                       
Query: 65  catgcccacagtccccttaggaatggtctaaaatgctaaggtttatgttcagtcgctaag 124
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 419 catgcccacagtccccttaggaatggtctaaaatgctaagatttatgttcagtctctaag 360

                                                                       
Query: 125 gtgttggctgtttaggaaacttaccttatttggttggtaacggacattggagagttgttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gtgttggctgtttaggaaacttaccttatttggttggtaacggacattggagagttgttc 300

                                                                       
Query: 185 tataacaatgactttatagttttagaacttaagttaaaaactcaatagacctcatgaagc 244
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 299 tataaaaatgactttatagttttagaacttaagttaaaaactcaatagacctcaagaagc 240

                                              
Query: 245 caaacaggttcgtggtggaaagataaactgttaat 279
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 caaacaggttcgtggtggaaagataaactgttaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no079_e18.g1 MSMg01no079_e18.g1 CHROMAT_FILE:
MSMg01no079_e18.g1 PHD_FILE: MSMg01no079_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:53 2005
         (176 letters)



>mm_chr2_90885166_90885741
          Length = 576

 Score =  298 bits (154), Expect = 1e-85
 Identities = 169/174 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaggggccccttcaagtcagctcccaggaccagacttgccttggcccggcagcagatgc 60
           ||||| |||||| ||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 201 gaaggagcccctgcaagtcagctcccaggaccagacttgccttggggtggcagcagatgc 260

                                                                       
Query: 61  caactttgctgcagcctggaagccttgggggcagggcaggcaggaagtgagcagagccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caactttgctgcagcctggaagccttgggggcagggcaggcaggaagtgagcagagccca 320

                                                                 
Query: 121 ggggagccttctctcccactagacagtgacctcctcgtctggaagggaggaaga 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggagccttctctcccactagacagtgacctcctcgtctggaagggaggaaga 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)