BAC Information

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BAC

Clone NameMSMg01-079I21
Chromosome2 (Build37)
Map Location 116,901,358 - 116,901,683
singlet/doubletsinglet
Overlap genenone
Upstream geneG630016G05Rik, 2810405F15Rik, LOC433464, Tmco5, LOC100043557, LOC241621
Downstream geneSpred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079I21.T7 (MSMg01no079_i21.b1)MSMg01-079I21.TJ (MSMg01no079_i21.g1)
ACCAG300607AG300608
length721748
length of high quality
(start - end)
331 (43 - 373)66 (71 - 136)
definitionCHROMAT_FILE: MSMg01no079_i21.b1 PHD_FILE: MSMg01no079_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:13 2005CHROMAT_FILE: MSMg01no079_i21.g1 PHD_FILE: MSMg01no079_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGTGATACAAGATTTCTGCATTTCACTAGAAGTGGTAAAGCTTCAGT
ACCAGTAAACTATGCTAAATTACCTCTGTCTGTTGGCATACTCTGAGGGG
GGAGAACAACAAACAAACAAACATGAAAACATACATTAAAAATACTACAG
ATAAAGCAAATCATACTCTTTAACGTTGTTAAATAATATACAGGAAGTCA
AAGAAAATGAAAACGAAGAGAGTCATAAATTCAGAAAAGCTAGAACTAGC
CCAAACATTCTTCAGTAACCATGGTGCATCCATAAGCACAGGAGGTTTCT
GGGGTGGGGGATGGAGTGGGGGTCCGCACCTCCTATCTTTTTCCCCTTTT
CTTTTTTATTCCCCCTACCGAATAACTTTCTTATTTTTTTCCCCTTTTAC
CCTTCCCCTTATCTCCCTTAGCCTTTTCCTATTCCTTTACTCTCCCCCGC
TATTTATCTGTTTTCCTTCCATTGCTCCTCCTCTTTCCTTATTGTATTCT
TTTTTAATCACTCGCTCTCCACTACATTCTTTTCCCCCCCATTTTCCATT
CATTTTATCACCACTTTTTTCGATTTTTTTAATATATATATTCATACTAA
TTTCCCATTTTATTTATTTTTCCTTCTCATATTTTTTAATTTCTTTTTTT
ATCAATCTTTCTCTAAACTTC
TACAGCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAATGTTTGTGGAAGGTGGAAGTCTTGCCAG
TGCTCAATGAGTCGGCCACTGTTGCTGGGGGGGTGGTGTGGGGTGCTAGA
AAACCAACAACCTCATCTTTCTCATCTTCTCCTCTCTCTCCTTCCTCACC
CTTTTTCTCTCTTCCTAACAAAAACAAAAAATTTTGTTAAAAACATACTA
CACTTCACTCCTTTATATTACTTTTCATCATTTCCATATTTATTCATTTT
AAATCTAACTCCTTTTTTTTTTTCTTTTCACTTTTTATCTTTCTTTTATT
ACCCTCCATTTCTCCCCCCCCCCCCCCCCCCTCTCTCTAATTTTTTTTTA
TCTCACCTTCTCTTATTCTCTCCCCCCCCCTCTTTCTCTATTCTCACTCA
TTATCAACACCAATTATTATTCTTATTCTACAACACCACTCATCTCTTAC
TTATCACCGTCTACCCATCTCCCCCTCTCCCTTCTCCCCCCCAATGTTTC
TTATCTCATTTATCTATACTATACCTCTCTCAAAATTTCTAAATCACCAC
CACACTACTCTCATAATTCCTTTTCTTCCCAACATTTCCTCCTCTTACCC
TCTACAAATTCTTCATATTTTTTCACCCCATCACACAACCTCTCCTATTA
ACAATGAAATCCACAACCATTATACAATTTAATCACCCTTTTTCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_i21.b1 MSMg01no079_i21.b1 CHROMAT_FILE:
MSMg01no079_i21.b1 PHD_FILE: MSMg01no079_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:13 2005
         (331 letters)



>mm_chr2_116901154_116901885
          Length = 732

 Score =  584 bits (302), Expect = e-171
 Identities = 320/328 (97%), Gaps = 5/328 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtga---tacaagatttctgcatttcactagaagtggtaaagcttcagtacc 61
           ||||||||||||   ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtgaaagta--agatttctgcatttcactagaagtggtaaagcttcagtacc 262

                                                                       
Query: 62  agtaaactatgctaaattacctctgtctgttggcatactctgaggggggagaacaacaaa 121
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 263 agtaaactatgctaaattacctctgtctgttggaatactctgaggggggagaacaacaaa 322

                                                                       
Query: 122 caaacaaacatgaaaacatacattaaaaatactacagataaagcaaatcatactctttaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caaacaaacatgaaaacatacattaaaaatactacagataaagcaaatcatactctttaa 382

                                                                       
Query: 182 cgttgttaaataatatacaggaagtcaaagaaaatgaaaacgaagagagtcataaattca 241
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 383 cgttgttaaataatatacaggaagtcaaagaaaatgaaaacaaagagagtcataaattca 442

                                                                       
Query: 242 gaaaagctagaactagcccaaacattcttcagtaaccatggtgcatccataagcacagga 301
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 443 gaaaagctagaactagcccaaacattcttcagtaaccatgctgcatccataagcacagga 502

                                       
Query: 302 ggtttctggggtgggggatggagtgggg 329
           ||||||||||||||||||||||||||||
Sbjct: 503 ggtttctggggtgggggatggagtgggg 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 732
Length adjustment: 9
Effective length of query: 322
Effective length of database: 723
Effective search space:   232806
Effective search space used:   232806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)