BAC Information

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BAC

Clone NameMSMg01-079P19
Chromosome2 (Build37)
Map Location 35,987,612 - 35,988,183
singlet/doubletsinglet
Overlap geneRbm18
Upstream geneRab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6
Downstream geneLOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079P19.T7 (MSMg01no079_p19.b1)MSMg01-079P19.TJ (MSMg01no079_p19.g1)
ACCAG300938AG300939
length733731
length of high quality
(start - end)		697 (37 - 733)572 (65 - 636)
definitionCHROMAT_FILE: MSMg01no079_p19.b1 PHD_FILE: MSMg01no079_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:45 2005CHROMAT_FILE: MSMg01no079_p19.g1 PHD_FILE: MSMg01no079_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAC
CCTACTGTCATAAATGGACAGATCATGGAAACACCAACTAAATGGAGACA
CATTTAAACTAACAGAAGTTATGAACTTTAATTTAATTGGTATCTATAGA
ACATTTCATTCTAAAACAAAAGAATGCACCTTCTTCTCAGCACCTCATGA
TACCTCAGCACCTTCTTCCAAATTTACCATATAATCGGTCACAAAACAGG
CCTCAACAAGAAGGTTGAAATATTCCCATGCATCCTATCAGATCACTAGA
GACTAAGACTGGTCTTCAATAGCAACAAAAACAACAGAAAGTCCACATAC
ACATGGAAGACTGGTCTTCAATAGCAACAAAAACAACAGAAAGCCCACAT
AAACATGGAAGACTGGTCTTCAATAGCAACAAAAACAACAGAAAGCCCAC
AGACACATGGAAGACTGGTCTTCAATAGCAACAAAAACAACAGAAAGTCC
ACACACACATGGAAGACTGGTCTTCAATAGCAACAAAAACAACAGAAAGC
CCACATAAACATGGAAGACTGGTCTTCAATAGCAACAAAAACAACAGAAA
GCCCACAGACACATGGAAGCTGAACAGTGTACTCAATGATAACTTGGTCA
AGGAAGAAACAAAAAAGAAGATTAAAGACTTTTTAGAATTTAATGAAAAT
GAAGGCTCAATATACCCTTATGGGTCACAATGA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGGGCAGCCAGGGCTACGCAGAGAAACCCTGTCTT
GAAAAACCAAAAAACCAAAAAGGTTAAGGAGCTGGGATACAGGTATATGA
AAGAGAATGAAGGATCTGGTGAAGAGGAAATAGCAGGAAGCGGCAGCAGT
GTTTAGTTGGGTAAGCTTAATTAGGAAAACTGGAACACTTTCTGCAAACT
TCCCTTGCAAGTCATCAGAAGATTAGAGCTTTTGATTCCCCTGACAATAC
AAGTAGCCCGTGCTCATACTCCTCCAATGCTGGGGAGCAACTATGTTAAT
TACTTAACTAGGTCCACTATTTTCTGCCCTTTGAGGATCTAAAAGTTCAG
GTATTTGAGCAACTTGAAGGAAATGATGTTTCCACAAGACTCATGAAATT
TAGCAAAGCGACACTAAGCTTTCAGGTGAATGAACCATAAGCTTTGATTG
GCAGCTGTTTTTTGAAAATAAGTGATGTAATAAATCAGTTTATTTGAGAG
AAAAATTATTTTAAGATAAGGAAATCATAGAAGGAAAATAGAGAACATTG
TTTTGGCACCACAGAAATAGGGATACCACGGGGGGGGGGGGGGCGGGCAT
CCTTCCTCTTCCCCTTCTCCCCCTCTCACTTCCCTCTATACTCTTATACC
CTCCCTTCTTTTTCCCTTTATTTTCTCACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_p19.g1 MSMg01no079_p19.g1 CHROMAT_FILE:
MSMg01no079_p19.g1 PHD_FILE: MSMg01no079_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:45 2005
         (572 letters)



>mm_chr2_35987412_35988384
          Length = 973

 Score = 1067 bits (552), Expect = 0.0
 Identities = 567/572 (99%), Gaps = 2/572 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggcagccagggctacgcagagaaaccctgtcttgaaaaaccaaaaaaccaaaaaggt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggcagccagggctacacagagaaaccctgtcttgaaaaaccaaaaaaccaaaaaggt 260

                                                                       
Query: 61  taaggagctgggatacaggtatatgaaagagaatgaaggatctggtgaagaggaaatagc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaggagctgggatacaggcatatgaaagagaatgaaggatctggtgaagaggaaatagc 320

                                                                       
Query: 121 aggaagcggcagcagtgtttagttgggtaagcttaattaggaaaactggaacactttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaagcggcagcagtgtttagttgggtaagcttaattaggaaaactggaacactttctg 380

                                                                       
Query: 181 caaacttcccttgcaagtcatcagaagattagagcttttgattcccctgacaatacaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacttcccttgcaagtcatcagaagattagagcttttgattcccctgacaatacaagt 440

                                                                       
Query: 241 agcccgtgctcatactcctccaatgctggggagcaactatgttaattacttaactaggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcccgtgctcatactcctccaatgctggggagcaactatgttaattacttaactaggtc 500

                                                                       
Query: 301 cactattttctgccctttgaggatctaaaagttcaggtatttgagcaacttgaaggaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactattttctgccctttgaggatctaaaagttcaggtatttgagcaacttgaaggaaat 560

                                                                       
Query: 361 gatgtttccacaagactcatgaaatttagcaaagcgacactaagctttcaggtgaatgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgtttccacaagactcatgaaatttagcaaagcgacactaagctttcaggtgaatgaa 620

                                                                       
Query: 421 ccataagctttgattggcagctgtttttt-gaaaataagtgatgtaataaatcagtttat 479
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 ccataagctttgattggcagctgtttttttgaaaataagtgatgtaataaatcagtttat 680

                                                                       
Query: 480 ttgagagaaaaattattttaagataaggaaatcatagaaggaaaatagagaacattgttt 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 ttgagagaaaaattattttaagataaggaaatcatagaaggaaaatagagaaaattgttt 740

                                           
Query: 540 tggcaccacagaaatagggataccac-ggggg 570
           |||||||||||||||||||||||||| |||||
Sbjct: 741 tggcaccacagaaatagggataccacaggggg 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space:   541206
Effective search space used:   541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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