BAC Information

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BAC

Clone NameMSMg01-080F01
Chromosome2 (Build37)
Map Location 99,336,286 - 99,336,583
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042886
Downstream geneLOC621386, LOC668702, LOC100042907, LOC241572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080F01.T7 (MSMg01no080_f01.b1)MSMg01-080F01.TJ (MSMg01no080_f01.g1)
ACCAG301188AG301189
length698698
length of high quality
(start - end)
447 (44 - 490)298 (71 - 368)
definitionCHROMAT_FILE: MSMg01no080_f01.b1 PHD_FILE: MSMg01no080_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:11 2005CHROMAT_FILE: MSMg01no080_f01.g1 PHD_FILE: MSMg01no080_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGTTTAGCTCAGGAGCCCATTTTTTAATTGGGTTATTTGGTTTTC
TAGAGTCTAACTAACTTTTTGAGTTAGTGAAGATCTTTTTCTGATCTGTA
TGTTGCCATTTTGTCTAATTGACAGTGTCTTTACAAAAGCTTTTCAATTT
TATGAGATTCCATTTGTTAATTTTTGATCTTAGAACCTGAGCCATTGGTG
ATCTGTTCAGATAACTTTTCCCAGTGCCAATACATTTAAGGCTATTTCCA
ACTTTCTCTTCTATTAGTTTCAGTGTATCTGGTTTTATGTGGACATCCTC
AATCCAATTGGACTTGAACTCTGTATAGTGATAAGTATGGATCAATTTTT
ATTCTTTTACATGCAGACTACCAGTTAGCTCAGACCCATTTTTTGAAGAT
GCTGTCTTTATTCCACTGTATATTTTTGGCTTTGCTGTCTGAGATCAAGA
GCCCATAGGTATGCGTGCTCATTTCTGGGTCTTTTATTGCACTCCATTGA
TACCCCTGCCTTTATTCATAGCAATACCATACCATTTTTATCCTTACTAC
TTGTCTCTACCGCTTGACGTCACGGACGCTTATCTCAACGGAAAGTCCTT
CATTGTTGAAAATTTTTTTCCGAATTTTCGCTTTTCCCGCAATTCAAT
ATGATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGAGACAGGGGACCAGGAATAGGGGTAACA
TTTGGAATGTAAATAAATAGAATTATTTAAAATACATAAACAAAAGCAAT
AAAATGTGTTATCATTACAACCACAGATACAAGATAAAAAAATAAGTATA
GGTAAAGTTTGATTTAGAATGACTATGCAGATATATATTCTACATAAATT
ATAACTGTATTTATTTTTGAAATTATAGCTTCATAATTATTAACATAAAA
TAATAATATTGTGTATTATACATGTATAGTATATTAACCTAATTTATCTT
ATAAGTATGTATGAGGCAACAATACAGATTCCAGTTTCTCGTGGCCTCAA
TTTATTCATTAGGATATGTTCATTCATGTATAGTGATTACTAACCACTTT
CCTTTTTTTTTTAATCTTTAGCAAACCATTTACTAGACTTTTATTTCATG
GTGTATTCCATAGGCTATCTATACCATTAGCATTGTATACAGGATTTAAT
TAATAATACTACCCCATTCATTTCATGAACTTTGCAAATTGAATTTTAAC
AATTCCCCATACAATTTCCCGCCGTTTTTTTTCTTGCCCCTTTCCTAACA
TGTATTGAAGGCTATTTAATTTTTACAACAGACACACCACCTTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_f01.g1 MSMg01no080_f01.g1 CHROMAT_FILE:
MSMg01no080_f01.g1 PHD_FILE: MSMg01no080_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:11 2005
         (298 letters)



>mm_chr2_99336086_99336783
          Length = 698

 Score =  561 bits (290), Expect = e-164
 Identities = 296/298 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagacaggggaccaggaataggggtaacatttggaatgtaaataaatagaattatttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagacaggggaccaggaataggggtaacatttggaatgtaaataaatagaattatttaa 260

                                                                       
Query: 61  aatacataaacaaaagcaataaaatgtgttatcattacaaccacagatacaagataaaaa 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aatacataaacaaaagcaataaaatgtgttatcattacaacaacagatacaagataaaaa 320

                                                                       
Query: 121 aataagtataggtaaagtttgatttagaatgactatgcagatatatattctacataaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataagtataggtaaagtttgatttagaatgactatgcagatatatattctacataaatt 380

                                                                       
Query: 181 ataactgtatttatttttgaaattatagcttcataattattaacataaaataataatatt 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataactgtatttagttttgaaattatagcttcataattattaacataaaataataatatt 440

                                                                     
Query: 241 gtgtattatacatgtatagtatattaacctaatttatcttataagtatgtatgaggca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtattatacatgtatagtatattaacctaatttatcttataagtatgtatgaggca 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)