BAC Information

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BAC

Clone NameMSMg01-080J04
Chromosome2 (Build37)
Map Location 58,173,066 - 58,173,173
singlet/doubletsinglet
Overlap geneAcvr1c
Upstream geneGpd2, LOC271788, Galnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926
Downstream geneLOC667062, Acvr1, LOC674940, Upp2, BC062650, Pkp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080J04.T7 (MSMg01no080_j04.b1)MSMg01-080J04.TJ (MSMg01no080_j04.g1)
ACCAG301377AG301378
length700699
length of high quality
(start - end)
108 (128 - 235)81 (77 - 157)
definitionCHROMAT_FILE: MSMg01no080_j04.b1 PHD_FILE: MSMg01no080_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:31 2005CHROMAT_FILE: MSMg01no080_j04.g1 PHD_FILE: MSMg01no080_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCTAAATCCACTAATAGCCTGGTCAGTGTAGTGACATATTAAG
ATCATTCTAATAGGGAGGCAGGACAGGACAACAGGTAAATTCTGTTCAGA
TTCTCTACTGCCACTTGCCTTGTGTCTTTCCTGTGCACTTTCATCTCTTT
GATGAGCTTGGACTATTCCCCCTGTTATTTTAGAAGCCTACTAACGATGA
GTAGCTCTCATCTAACACACACTCTCTATTAACAAAGAACATCGGTCTTG
ATAGCCTGGGATAAAAGTGGATATTGTGGACAAAGTATCACTAATTATTG
CCGAAAGAGGTGTGAGCATGGCGCCAGACGTTTCCAGGTGGTCACTACAT
ACTTCACTACATGGTTTTTAGACGCATTAATAAGGTTCCATATATTTGAC
ATACTGATAGGACTATCCCACCCTATTTGCCATAAAATTGTCTTTTTTAC
TGACCTATTATCTAATGACCCTTTCTACACACCTTCCCCCACTTACCTTT
TTGTTATTTTACCACCTTTCTACCCCTTTGCCCCACAGTCTCATGCCCCT
TCCCCTTGCGCTTCCTTTGTTTGATATATCCACTCCCTCGCTCCGTTTAT
TATTGTTTCTCTACCCCTTTGCCTTTTTGCGTTCCCACCCACCCTTTTTA

TTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGACTGTTACCAAATACAAGTAAG
TTGCTTGCCTGTAGTTAAGCTATCTCCGAGCAGCTGGCAGCTTCATTGTC
CTGCAGGGGACAGCACTGGAAACTGGGAGGAGTCATAGCACCTTCAAACT
CACTCCAGAAGTGTCTGGAGTGCATAGTCTGTAAGGCTCACCAACATACA
GAACTGAAATTTTGAAAACCTTCAAAGAGGCATGCCAGACAACCCATCCT
GAGCTTCACGCACTGTCCCTTGTGACCTTTTCCTTCTCTTTCTTTGGTAC
TAATGTGTTTGCCCATGACAGCGCATTCTAGGATAGCTACAGCGTTACTG
TTATATTTTTTTTTTTCACACNGGCTGCATATCGACTATAGGCCCCATGA
CACTGTCCAAATTCTATGTGTGGCCCCCGCCACCTCCTTTGTAGCCCTCC
TGTGCTATTTTTATCCCCTGTTCTTGCTCCTCCAACTAAATGTATATCTT
CTAGTGTTCCCCTGCGCCGTCCATGACTATCCCCTTTTTTTCCCTTATGC
CCCCAATATTGTCTCTTCCGACTCCCCTAGCACCCGCACTGTCCACTCCC
ACACCCCCGTATTACTCCCTTTTCCTACGCCTTACATTTTTTTCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_j04.b1 MSMg01no080_j04.b1 CHROMAT_FILE:
MSMg01no080_j04.b1 PHD_FILE: MSMg01no080_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:31 2005
         (108 letters)



>mm_chr2_58172866_58173373
          Length = 508

 Score =  194 bits (100), Expect = 2e-54
 Identities = 106/108 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaacaggtaaattctgttcagattctctactgccacttgccttgtgtctttcctgtgca 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 acaacagggaaattctgttcagattctctactgccacttgccttgtgtctttcctgtgca 249

                                                           
Query: 61  ctttcatctctttgatgagcttggactattccccctgttattttagaa 108
           |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctttcagctctttgatgagcttggactattccccctgttattttagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 508
Length adjustment: 8
Effective length of query: 100
Effective length of database: 500
Effective search space:    50000
Effective search space used:    50000
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)