BAC Information

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BAC

Clone NameMSMg01-080K02
Chromosome2 (Build37)
Map Location 104,578,384 - 104,578,834
singlet/doubletsinglet
Overlap geneDepdc7
Upstream geneNat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964
Downstream geneQser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080K02.T7 (MSMg01no080_k02.b1)MSMg01-080K02.TJ (MSMg01no080_k02.g1)
ACCAG301421AG301422
length695699
length of high quality
(start - end)
426 (39 - 464)451 (70 - 520)
definitionCHROMAT_FILE: MSMg01no080_k02.b1 PHD_FILE: MSMg01no080_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:36 2005CHROMAT_FILE: MSMg01no080_k02.g1 PHD_FILE: MSMg01no080_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTAAACGACTCCTATATCCAGAGATCCGCGGAATTCT
GTCTTTACCATAAGCTTGTATAAAACCCTCAACCTATAAATGTTAATTTG
GGGCTGGGGAGACAGCTGAATGGGTAAGAGCTCTTGTTATGTAACCCTGA
CAACTTCCACCTTGATCTACATCACTCATGAAAAAGCCACAGATTCATGT
ACCTGTAGCCCCAGTACAGGTAGAGTCTGGGAGTTTGCTGACCAGGCAGA
ATAACCAGTGTTACAAGTTTCAGGTTCAGTGAGAGACTCTCCCTCAGAGA
GTAAGAGATGGAGAGAGATGGAACAGGACACCTAACATTCTCTTCTGGCC
TCCAGATGGGTAGGAGCACCAACACATGAGCACACATATCTCACATACAA
ATACACACATGTGCACACATAAACATACATTACAAACACACACACACACA
CACTCAAACACACATGCACCATAAAAGCATAGCAACTTATTAGCAATAGG
CCCTCAGTTGAATCCTATAAAGAAAAAAGGTGGGAAGGAAAATTATTAGG
GAACTAACCTTGGGAAATAGAGTCGTCTCATCCGCTGTTTACCGCGTAAT
ATTCATTTATAAGATAGCCTTCCTCCTAAACCCCCATATTAATAATTTGG
CGCCTAAACACCCCATGTCATTGTCTGGAATTGCCCACCCTTCCC
TGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAACCTTTAGTCATTTATTTGAAATACTGAT
CATTGCCATTTTTAATGATACATAATGATGTTATGTATAAGTTACTAACC
AATAATTCCTTTAAAGCCAACTCATAAATCAGCCACGGTAGGACATTACA
TTTACTCAGATTACAAGGGACACTCAGGATCAACCTTGAAAACAGCAGTT
CACCCTTACTGAGAGAGCCTAGTCAGGGGAAGCCGCTCTAACCATGCAAG
TGCCTACAGGTACATCAGCATGCACTCTGTAGCCAGGCTGTGACAGAGGG
GTAGCATGCACACATGACTCCTGAAAACATGCTACTTCGCTCATTTGCTC
TTGAAATGGTCTCACCACGCAGCTCTGGCTGGCCTGAAACTCCCCATGTA
GACCAGCCTGGTCTTTAGCGCACAGAGATCTACCTTTAATCCCTTGACCT
TTCAAGTCCTGGGATTAAAGGTATGTGTTACCAAGCATGAAATGATTATT
TTCATTCTAGAGCTTTGGACTGAAAATTTATAAAGTCATTGAAATAACTA
ATTTTTCTCCCATAAAACTTTAAGAAATAGAGTTAGGACATCGTTTTCAA
GTTTCTGCACAGTTATTGAGTTCCCACAACTTTATCCGCCTTATGAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_k02.g1 MSMg01no080_k02.g1 CHROMAT_FILE:
MSMg01no080_k02.g1 PHD_FILE: MSMg01no080_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:36 2005
         (451 letters)



>mm_chr2_104578184_104579034
          Length = 851

 Score =  849 bits (439), Expect = 0.0
 Identities = 448/451 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacctttagtcatttatttgaaatactgatcattgccatttttaatgatacataatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacctttagtcatttatttgaaatactgatcattgccatttttaatgatacataatgat 260

                                                                       
Query: 61  gttatgtataagttactaaccaataattcctttaaagccaactcataaatcagccacggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttatgtataagttactaaccaataattcctttaaagccaactcataaatcagccacggt 320

                                                                       
Query: 121 aggacattacatttactcagattacaagggacactcaggatcaaccttgaaaacagcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggacattacatttactcagattacaagggacactcaggatcaaccttgaaaacagcagt 380

                                                                       
Query: 181 tcacccttactgagagagcctagtcaggggaagccgctctaaccatgcaagtgcctacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacccttactgagagagcctagtcaggggaagccgctctaaccatgcaagtgcctacag 440

                                                                       
Query: 241 gtacatcagcatgcactctgtagccaggctgtgacagaggggtagcatgcacacatgact 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtacatcagcatgcattctgtagccaggctgtgacagaggggtagcatgcacacatgact 500

                                                                       
Query: 301 cctgaaaacatgctacttcgctcatttgctcttgaaatggtctcaccacgcagctctggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgaaaacatgctacttcgctcatttgctcttgaaatggtctcaccacgcagctctggc 560

                                                                       
Query: 361 tggcctgaaactccccatgtagaccagcctggtctttagcgcacagagatctacctttaa 420
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 561 tggcctgaaactccccatgtagaccagcctggtctttagtgtacagagatctacctttaa 620

                                          
Query: 421 tcccttgacctttcaagtcctgggattaaag 451
           |||||||||||||||||||||||||||||||
Sbjct: 621 tcccttgacctttcaagtcctgggattaaag 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)