BAC Information

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BAC

Clone NameMSMg01-080M14
Chromosome2 (Build37)
Map Location 81,505,285 - 81,505,631
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC103324, LOC668027, LOC100040624, LOC100040655, LOC100040704
Downstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080M14.T7 (MSMg01no080_m14.b1)MSMg01-080M14.TJ (MSMg01no080_m14.g1)
ACCAG301540AG301541
length892701
length of high quality
(start - end)
---347 (68 - 414)
definitionCHROMAT_FILE: MSMg01no080_m14.b1 PHD_FILE: MSMg01no080_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:48 2005CHROMAT_FILE: MSMg01no080_m14.g1 PHD_FILE: MSMg01no080_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGTGAGCGTGCGCGCGG
AATTCTTTGTTTTTTCCTAGAACACATCATTTTTAAGTTCCTTAGGTGGT
CTAACTTCTTAGGAGTTCTTTGTATATATGTCGGATATTAAGCCCCTCTA
TCGGGATCGTAGGATTAGGTACAGGATNNCTTTTTGCAATCTAGTTCGGT
TCGCCATTCTTCGCTCTTATTAGACATGTGTTCCTTTTTCCCTTACACGA
TAGCTTCTGCAATCTTTAGCGAGCGTCCCACTTCTGTTGTATTCTTCGTA
TCTATAGACCTATATAGCCACCTGTGTGCTTCTGTCTCATGAAAAATTCT
CTCCCTGTAGCCATCGTAGCCTTTTCGATAATTTCTTCCACATTTTCCCC
TCCTATTACTCCTCAGACGTATTTTGTTTTTTACCGCCCCACCCTCCCTG
ATTCCTATTTGTTACTTAGCATCTTTGTTATTGCCACCATCCCCACCCGC
TTCCCGCAATTTCTTTCCTTCTCTATCTTTGCTAGCCCCTCCCTTACCTT
TATCACCTCTTTCCACCTTCTTTTATTTCTCGCTCCCCGCCCCTCCCCAT
TCCCCTAACTGTATTGCCTTTATTATCTTTTCTTTCTATCACATTACCCC
TACCTATCCCTCACAGTTCCTTTCGTTTTCTATTCCGCCTTTTCTTTTTT
CCTATATTTACCCTACTCTCTACACCTCTTCCTTTTCCCCGTTTCTTTAT
TCCACCTTTTTATTCTCTTTAATTCCTCGTATCTCCACTTTCTCCCGCGC
CCCGTCTTCTTTTTTTTTTCCCCTCTCTTTCTCTCTTTCCCGCCCCTTAT
CCCCTTTTATCTGCTTATTTCTTTCCCCTCACTCCCTGTTTG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTAAATGGAAAATTATTAGAATTATTGCTTATAA
TTAAATGTAATATAATTATGAGAATATACATGGACTTGTGGATTGTTATG
GTAACAAAATAAAAATTTAACAATATAATTGATGTTGAATTTCTTTTTCA
TAATTGCTTAATTGTTTTGTCATGAATTTATTATTAACCTAGGCCCATCA
GTGGTATATCTATGCAAAATAGTTGCTCATGCTTAAATTAATATCAGCTA
TAATATAAAATCAGCTCCTGAAAATAGCAGAATCAGATCTCAATCATGCA
AATCAAAACTAAATATATCATTGTAAAAAATGTGAATATTAAAAAATTCA
TGGAAAAAAAATGCCAGGTATGGTGGCGCATGCCTTTAATCCCAGCACTC
GGGAGGCGGATTTCTGAGTTTGAGGCCAGCCTTGTCTACAAAGTGAGTTC
CAGGACAGCCAGGAGGGCTATACAGAGAAACCCTGTCTCCAAAAAACCAA
AAAAAAAAAAAAATTAATGGATATTCAGGCAATTCCTAGAGTTTAAGTTT
GATCCAAATGAACTACCATTTGCCAATGCATTANAACCAGCTTCAATTTA
CACATGTCTTTTCCACTGTAAAGATACCTTATTATATACCCTTGTTAACT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_m14.g1 MSMg01no080_m14.g1 CHROMAT_FILE:
MSMg01no080_m14.g1 PHD_FILE: MSMg01no080_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:48 2005
         (347 letters)



>mm_chr2_81505085_81505831
          Length = 747

 Score =  663 bits (343), Expect = 0.0
 Identities = 346/347 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaatggaaaattattagaattattgcttataattaaatgtaatataattatgagaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaatggaaaattattagaattattgcttataattaaatgtaatataattatgagaatat 260

                                                                       
Query: 61  acatggacttgtggattgttatggtaacaaaataaaaatttaacaatataattgatgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatggacttgtggattgttatggtaacaaaataaaaatttaacaatataattgatgttg 320

                                                                       
Query: 121 aatttctttttcataattgcttaattgttttgtcatgaatttattattaacctaggccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttctttttcataattgcttaattgttttgtcatgaatttattattaacctaggccca 380

                                                                       
Query: 181 tcagtggtatatctatgcaaaatagttgctcatgcttaaattaatatcagctataatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagtggtatatctatgcaaaatagttgctcatgcttaaattaatatcagctataatata 440

                                                                       
Query: 241 aaatcagctcctgaaaatagcagaatcagatctcaatcatgcaaatcaaaactaaatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatcagctcctgaaaatagcagaatcagatctcaatcatgcaaatcaaaactaaatata 500

                                                          
Query: 301 tcattgtaaaaaatgtgaatattaaaaaattcatggaaaaaaaatgc 347
           |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tcattgtaaaaaatgtgaatattaaaaaatgcatggaaaaaaaatgc 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)