BAC Information

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BAC

Clone NameMSMg01-080P20
Chromosome2 (Build37)
Map Location 157,195,131 - 157,195,663
singlet/doubletsinglet
Overlap geneManbal
Upstream geneLOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678
Downstream geneSrc, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080P20.T7 (MSMg01no080_p20.b1)MSMg01-080P20.TJ (MSMg01no080_p20.g1)
ACCAG301696AG301697
length774711
length of high quality
(start - end)
---533 (66 - 598)
definitionCHROMAT_FILE: MSMg01no080_p20.b1 PHD_FILE: MSMg01no080_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:03 2005CHROMAT_FILE: MSMg01no080_p20.g1 PHD_FILE: MSMg01no080_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGCCGCTATACACTCCTATATTCAGCAGGACCGCGGAATTCTCTGCCC
TCTCAAGCACTGGTAGCTACTCAGCTCATATTTGTTGACCTGGATCGATG
AGTGCGTGGATATATGAATGTCATATGTGCATATGCACGGCCAGTAGGTA
GATGATAGATAGATAGATAGATAGATAGATAGATACATAGATCACATAGC
CCTCCCTCCTCCCCTTCCCCTTCCCCCCCCCTCCCCTCCCCCCTTCCTTC
CCCCTTTCTTTCCCCCCTCCCCCTCTTCTCTCCCTCCTCACTCCCCCCCC
TCGCCCCCCCCCCCCCCCCTCTCTCTCCCCTCCTTCCTCCCTCCCCCCCC
TCCTCCCTTCCCTCCTCCTTTCCCCCCCCCCCCCTCCTCCCCGCCCCCCC
CCCCTTCCCTCCCCCCCCCGTGCCCCCCCCCCCCCCCCCTCTCCCCTCCT
CTTTCCCCCCCCCCCTTCCTCCTCCCCCCTTCCTCTCTCCCCCTCTTCCC
CTTCCTCCCCTCCCCCCCCCCCCCTCCCCTCTTCTCCCCTCCCCATTCCT
CCTCCCCCTCTTCCCTCCCCCCCCTCCCTCTCCCTCCCCCCCCCCCTCCC
CCCCCTCCCCCTCTCTTCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCC
TTCCCACCCCCCCTCCCCTTTCCCCCTCCCCCTTCCCTCTTCTCTCCGCC
CCCCCTCCCCCCCCCTCCCCTTTCTTTCCCCCCCCCTCTTTCCCTCTTCT
CCTCTCCCCCCCCTCCCCTTCTCN
GTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGCATACAGACTAGACTGGTTTAGAACTCAAAGAG
ATCTGTCTGTCTCCCTAGTGTTGGGACAGAAACTGTATTCTGTCCCAAGC
AACTGCAGCGTCTTCTTGAAAGGTTTTATTAACTGAAGTTTTTAGGGTAA
AAGACTTGGCTCTGACAGTGCCAGCGAGCTAGATTTGGCTACTGATTGCT
AATATTTTAGTTAATGAGATAACTAGCAGTGAAGATCAGAAAAGAGATGT
ATTCAGTGTGCCCGCATTGGAAAAAGGAACAAATAATAGGATCCTCTGGC
TTCCAAGTCCCTCCCCAAGATTCTGTCATGGAGTTTAGGCTTGAATAGAG
GTGGAGGCATGCATAGCTAAGCAGTTCTGGCAGGATGAGGTCCTGCCTGT
CATTGATCCACACTGGTCCTCCTTCCAGTCTGCCCAGCAAGGTGATCTGA
TACTTTGTAAAAACTGTATGAAATCTTTCTACACTTGCATAGAAAGTGAC
TTGCATAAGGGCTTCATCCTTTCTCTTTCCCCAGGAGTCTTTGATTCTAG
CACTAGGGAAGCAGAGGCAGGGGGAACTCTGGGAGTCCAAGGCCTTAGAG
GTCTACATGTCTTGTTTCATAGTGAGACTCTGTCACAAACCAATAGAATA
TGTCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_p20.g1 MSMg01no080_p20.g1 CHROMAT_FILE:
MSMg01no080_p20.g1 PHD_FILE: MSMg01no080_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:03 2005
         (533 letters)



>mm_chr2_157194931_157195863
          Length = 933

 Score =  977 bits (505), Expect = 0.0
 Identities = 526/533 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatacagactagactggtttagaactcaaagagatctgtctgtctccctagtgttggg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatacagaccagactggtttagaactcaaagagatctgtctgtctccctagtgttggg 260

                                                                       
Query: 61  acagaaactgtattctgtcccaagcaactgcagcgtcttcttgaaaggttttattaactg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagaaactgtattctgtcccaagcaactgcagcgtcttcttgaaaggttttattaactg 320

                                                                       
Query: 121 aagtttttagggtaaaagacttggctctgacagtgccagcgagctagatttggctactga 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 aagtttttagggtaaaagacttggctctgacagtgccaacgagctagatttggctactga 380

                                                                       
Query: 181 ttgctaatattttagttaatgagataactagcagtgaagatcagaaaagagatgtattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ttgctaatattttagttaatgagataactagcagtgaagatcagaaaagagatgtattcg 440

                                                                       
Query: 241 gtgtgcccgcattggaaaaaggaacaaataataggatcctctggcttccaagtccctccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgcccgcattggaaaaaggaacaaataataggatcctctggcttccaagtccctccc 500

                                                                       
Query: 301 caagattctgtcatggagtttaggcttgaatagaggtggaggcatgcatagctaagcagt 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 501 caagattctgtcatggagtttaggcttgaatagaggtggaggtatgcatagctaagcagg 560

                                                                       
Query: 361 tctggcaggatgaggtcctgcctgtcattgatccacactggtcctccttccagtctgccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctggcaggatgaggtcctgcctgtcattgatccacactggtcctccttccagtctgccc 620

                                                                       
Query: 421 agcaaggtgatctgatactttgtaaaaactgtatgaaatctttctacacttgcatagaaa 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcaaggtggtctgatactttgtaaaaactgtatgaaatctttctacacttgcatagaaa 680

                                                                
Query: 481 gtgacttgcataagggcttcatcctttctctttccccaggagtctttgattct 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgacttgcataagggcttcatcctttctctttccccaggagtctttgattct 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)