BAC Information

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BAC

Clone NameMSMg01-081A05
Chromosome2 (Build37)
Map Location 154,603,352 - 154,603,785
singlet/doubletsinglet
Overlap genenone
Upstream geneEG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692
Downstream geneRaly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081A05.T7 (MSMg01no081_a05.b1)MSMg01-081A05.TJ (MSMg01no081_a05.g1)
ACCAG301714AG301715
length750697
length of high quality
(start - end)		98 (67 - 164)438 (70 - 507)
definitionCHROMAT_FILE: MSMg01no081_a05.b1 PHD_FILE: MSMg01no081_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:05 2005CHROMAT_FILE: MSMg01no081_a05.g1 PHD_FILE: MSMg01no081_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATGGTACCATGAGAGAGCCCACTCCTGCATGCTGTCCTCTCTCTAAC
CTCCATATGCGATCTGTAGCACAATTATACTCTCACTCACTGAAATAAAT
GTTGAAGAGGAGGAGCCGCACGTTTTTGCTTCCTCTGTTTCTCCCTTTCT
TCCCNGCTTTCTTTCCCTCCCCCCCTCTCTTTCTTCCCCTCCCCCCCCCN
CCCTCCCCTTTTCTCTCCTTTCTTCTTTCTTCCCCTCTTCTTCCCTCCTC
TCCTCTCCTCTCCTTTCTTCCCTCTTTCTCTTTTTTTTTTTTTCCTCTCC
CTTTTTCCCCTCCCTCTTTTTTTCTCTCCCCCCCCCCTCCCTCTCCCTTC
CCTCCCCCCCCCCCCCCCCCCCCCTCTCCCCCCTCCCCCCTCCCCCCTTC
TTCCTCCTCCCCCTCCCTTCCTTTTCCCCCCCCCCCCTCCTCCCCCCCCT
TCCTCCCCTCCTCTTTCTCCTCTCCCCTTTTCTTTTTCTTCCTCCCTTTT
CTCCCCTCCCCCTTCTTTTCTCCTTTCCCCCTCCTCCTTTCTCCTCCTCT
CCCCCTCCCCCCTCCCTCTTTTCTTCCCCCTCCTCCTTCTTTCCCCCCTT
CCTCTCCCCCCCCCCCTCCTCCCCTTCCCTTCTCCTCCTCCCCTTTCTCC
CCTCCCCCCCTTTTCCCCTCTCTCTCCTCCCCCCTCCCTTCCCCTTCTCC


TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTGGCACAGACTGACCACTTCAGAGATGA
TTACCGCAGGTAGGACTCTGCTGAGGGGTATCCCGGGTCATAAGAGCAAG
CTTGGTATATACTCAGGGAACCAGAGCAGAGGACTGGAGATGGTGGATAT
CACAGAGATATCCACCATCGAGTGACAGGTGGTGAATTAGTAGTGACCTC
CATATCCTTTCCCAGTGCATGGGGTAACTCTAAGGCAGGTTTTTTTGTTT
TGGCTTGTTTTGGTTTTTCAAGACAGGTTTCTCTGTGTAGCCCTGGCTGT
CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAGATCTGCC
TGCCTCTGCCTCCCAAGTGCTAGGATTAAAGGCGTGCGCCACCATTGCCC
AGCTAAGGCAGGTTTTTTTTTACTGTCTCCTGGAGCCATGCCCCCCACCC
CCCAGCAGAACTGAACCTAGTTTGCCTTTGGGTGTGTGGGGGGCAAATAC
CCCTTTATTATTACATTTTCCTTTCTGTCCCATCCCTTACTTAACTGTTT
TCTTCAGATTCCTCCCCACTATAAAAACATTCGCTTTCAGTTCGGCGCTT
TTTGCTTTTGCTCTCCCCCTTTCTTTTTCATTAAATCCCCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_a05.g1 MSMg01no081_a05.g1 CHROMAT_FILE:
MSMg01no081_a05.g1 PHD_FILE: MSMg01no081_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:05 2005
         (438 letters)



>mm_chr2_154603352_154604189
          Length = 838

 Score =  832 bits (430), Expect = 0.0
 Identities = 433/434 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttggcacagactgaccacttcagagatgattaccgcaggtaggactctgctgaggggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 acttggcacagactgaccacttcagagatgattaccgcaggtaggactctgctgaggggt 375

                                                                       
Query: 61  atcccgggtcataagagcaagcttggtatatactcagggaaccagagcagaggactggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atcccgggtcataagagcaagcttggtatatactcagggaaccagagcagaggactggag 315

                                                                       
Query: 121 atggtggatatcacagagatatccaccatcgagtgacaggtggtgaattagtagtgacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atggtggatatcacagagatatccaccatcgagtgacaggtggtgaattagtagtgacct 255

                                                                       
Query: 181 ccatatcctttcccagtgcatggggtaactctaaggcaggtttttttgttttggcttgtt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 254 ccatatcctttcccagtgcatggggtaactctaaggcaggtttttttgttttggtttgtt 195

                                                                       
Query: 241 ttggtttttcaagacaggtttctctgtgtagccctggctgtcctggaactcactctgtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ttggtttttcaagacaggtttctctgtgtagccctggctgtcctggaactcactctgtag 135

                                                                       
Query: 301 accaggctggcctcaaactcagagatctgcctgcctctgcctcccaagtgctaggattaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 accaggctggcctcaaactcagagatctgcctgcctctgcctcccaagtgctaggattaa 75

                                                                       
Query: 361 aggcgtgcgccaccattgcccagctaaggcaggtttttttttactgtctcctggagccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  aggcgtgcgccaccattgcccagctaaggcaggtttttttttactgtctcctggagccat 15

                         
Query: 421 gccccccacccccc 434
           ||||||||||||||
Sbjct: 14  gccccccacccccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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