BAC Information

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BAC

Clone NameMSMg01-081A13
Chromosome2 (Build37)
Map Location 53,302,670 - 53,421,779
singlet/doubletdoublet
Overlap geneLOC666872, LOC666876
Upstream geneCacnb4, OTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6
Downstream geneLOC207933, Rprm, LOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081A13.T7 (MSMg01no081_a13.b1)MSMg01-081A13.TJ (MSMg01no081_a13.g1)
ACCAG301730AG301731
length701695
length of high quality
(start - end)
131 (341 - 471)519 (72 - 590)
definitionCHROMAT_FILE: MSMg01no081_a13.b1 PHD_FILE: MSMg01no081_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:06 2005CHROMAT_FILE: MSMg01no081_a13.g1 PHD_FILE: MSMg01no081_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,302,670 - 53,302,800)(53,421,261 - 53,421,779)
sequence
TATTTGCGGCGCTATACGACTCCTATTCCGAGAGGATCCGCGGAATTCAC
ACGTGTCCCAAAGGTTGATACATAGGAGCATAAAGTAAAATGGCAACTGG
CAGGTAGGATACAGTGTTTGGTGGAGTTGGGACCTGCATCAAAGATGGTC
AATGCGATTTACGCTAGAGTTACTCTGGAACAAGAAGTTTTCATGTGTTA
TTGTAATCCAGAGAATGATGAAAATGATGATATTATAATGTCCTCATTAT
TTCAAGTCTGGAAGAAATGATTGCGTATAAATAGAAATGTTTTGAGGAAA
CAGACATATTCTAATTTATTTAAGCATTAAACAGTATGTGTATGTATTGA
ACACATACGTACATACAGTGTATATAAATAAAACCTACTGAGTCCATTTA
ACTTTGATTATATGTGAATATGTCCATGCTGATGACTGGGGTCATATGAC
CTATGTGGTAGTTCATCCCTGGAGGTAGCTGGTTCTTTTTTTTTTTAATT
GGATATTTATTTCATTTGCATTTCCAATGCTATCCTAAAAGCCCCCCACA
CGCTCGATCACCCTCTCCCCCACCGATTAATTCCTACTCCCACCATCTTG
GCCCTGGAATTCCCCCGTACTAATACTATACCGTTTTGCACCATACCTTG
CTCCTCTCAGATCTAATCACGCTCCATTTTTTCCACCATCCTGATTCATA
A
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGTAAAGGACTCCCCTTAGCTGATGATC
ATCTCAGCAAATGTATAAATCAATTTTGCTAATCTTCAGCTAAGTACAAA
TGAAGAATTAGGACTATATCAAGCTTATTGGTTTCTTCCCAACAGTGTTT
TCTAATATGTTGCTTCTATCTCATAAATTAAAATATTTCCACAAATCATC
TCAGAGTCATATTTAATAATTAGCAAGTTCCGATTCTCTGCTAAATGTTT
CCTTTGTTGTTAAGGAAAATTAGTTCACTGAATACAGAAGGAGAGGGAGA
ATGTGGGATAAATAAAATTAAATGTCTTTGCAAATACCTTAAGAAATCAT
AGTTTATATTTACCTAAGTTTTCATATAATGCATATAATCTTAAATGAGT
TTATGCAACTTGGGGTGACAATGTTATATCTAACAAAACCCTAGTACTAT
CATTAGAAATCTCCTTTCTAGTTTTTCAGGCTCATCCAAGAGTCTCCCAA
AATAATATAGTCTATTAATATTACCCTTGATTGCCTCCCAAGGGAAGGCA
ATGTTTTAGTTATGGTTTCTCCAGCCCAGGGATAACGCCATCCACCATGG
TCTGGGTCCACACTCATCAGTCACTAATTAAGAGCATTTCTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_a13.b1 MSMg01no081_a13.b1 CHROMAT_FILE:
MSMg01no081_a13.b1 PHD_FILE: MSMg01no081_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:06 2005
         (131 letters)



>mm_chr2_53302470_53303000
          Length = 531

 Score =  230 bits (119), Expect = 2e-65
 Identities = 128/131 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgtattgaacacatacgtacatacagtgtatataaataaaacctactgagtccattta 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtattgaacacataggtacatacagtgtatataaataaaacctactgagtccattta 260

                                                                       
Query: 61  actttgattatatgtgaatatgtccatgctgatgactggggtcatatgacctatgtggta 120
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 261 actttgattatatgtgaatatgtccatgctgatgactggggtcagatgacctatgtggga 320

                      
Query: 121 gttcatccctg 131
           |||||||||||
Sbjct: 321 gttcatccctg 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no081_a13.g1 MSMg01no081_a13.g1 CHROMAT_FILE:
MSMg01no081_a13.g1 PHD_FILE: MSMg01no081_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:06 2005
         (519 letters)



>mm_chr2_53421258_53422176
          Length = 919

 Score =  965 bits (499), Expect = 0.0
 Identities = 514/519 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtaaaggactccccttagctgatgatcatctcagcaaatgtataaatcaattttgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atgtaaaggactccccttagctgatgatcatctcagcaaatgtataaatcaattttgcta 463

                                                                       
Query: 61  atcttcagctaagtacaaatgaagaattaggactatatcaagcttattggtttcttccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atcttcagctaagtacaaatgaagaattaggactatatcaagcttattggtttcttccca 403

                                                                       
Query: 121 acagtgttttctaatatgttgcttctatctcataaattaaaatatttccacaaatcatct 180
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gcagtgctttctaatatgttgcttctatctcataaattaaaatatttccacaaatcatct 343

                                                                       
Query: 181 cagagtcatatttaataattagcaagttccgattctctgctaaatgtttcctttgttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cagagtcatatttaataattagcaagttccgattctctgctaaatgtttcctttgttgtt 283

                                                                       
Query: 241 aaggaaaattagttcactgaatacagaaggagagggagaatgtgggataaataaaattaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 282 aaggaaaattagttcactgaatacagaaggagagggagaatgtgggataagtaaaattaa 223

                                                                       
Query: 301 atgtctttgcaaataccttaagaaatcatagtttatatttacctaagttttcatataatg 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 222 atgtctttgcaaataccttaagaaatcatagtttatatttacctaaattttcatataatg 163

                                                                       
Query: 361 catataatcttaaatgagtttatgcaacttggggtgacaatgttatatctaacaaaaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 catataatcttaaatgagtttatgcaacttggggtgacaatgttatatctaacaaaaccc 103

                                                                       
Query: 421 tagtactatcattagaaatctcctttctagtttttcaggctcatccaagagtctcccaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 102 tagtactatcattagaaatctcctttctagtttttcaggctcatccaagagtctcacaaa 43

                                                  
Query: 481 ataatatagtctattaatattacccttgattgcctccca 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 42  ataatatagtctattaatattacccttgattgcctccca 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)