BAC Information

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BAC

Clone NameMSMg01-081C02
Chromosome2 (Build37)
Map Location 84,897,534 - 85,018,289
singlet/doubletdoublet
Overlap geneTnks1bp1, Agtrl1, LOC625033
Upstream geneLOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1
Downstream geneLrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081C02.T7 (MSMg01no081_c02.b1)MSMg01-081C02.TJ (MSMg01no081_c02.g1)
ACCAG301804AG301805
length703699
length of high quality
(start - end)
363 (67 - 429)377 (69 - 445)
definitionCHROMAT_FILE: MSMg01no081_c02.b1 PHD_FILE: MSMg01no081_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:14 2005CHROMAT_FILE: MSMg01no081_c02.g1 PHD_FILE: MSMg01no081_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,897,534 - 84,897,896)(85,017,913 - 85,018,289)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTTAATGTCGTTGGGAGAAAGCAGAGTGGAACAGTGCAGGAGAACCAG
AAGCCTGGTGCCACCTCTGTCTCCTTCCTTTCCCTGATGTCATCTCCTCT
CTCTGTTCCCAGTAACCACAGCAGATTTTTCTTTTTCTTTTATACCGGGG
GCCCATATGCATAAATCTTATTTAATCTTTATCTAACTCTGACATAGACG
TTGGTGTCAGTCCTAAAGTACAGGTGTGAACCCGAGGACCGAAGAGATCC
CGTGGAAATGAGATGTTCTACTTATAGGAGGCAGTCCAAGGATTGCTAGA
AGCCATGTGCCTTTCAGGACTCCCCTTATTCTTTGCTTGAATCCATAGCC
TCCGTGCTCTCTTGGGTAGTACTGAGACCTGTGCTCAGAGCAGAGGATGG
AGATCCATTCCTCCACTTGGCCATCCTAGGAGATGCTCTGGGTTTGGAAT
GAACTTGCAGTGTTCTTGGGGGCAAGCCCTCTCCCTTCGTTTTTTGCACA
TAGCCTACATTTCCCCCTTCTTCTATCTATATAGTGTGCGCCATTTGCCC
GAGAACTGTACCCTCTTCCAGGACAACCTTATGTGAGCCCTGCGGTTTGA
GCCCCTGATATAGCGCCCATGTTGTCCTGTGATTACAACGCGCTTTCCTT
TTC
AAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACTCAATACCAGATTTTTATTCTCCACACCA
AGTCCATACCTTCTGATTCCAACAATGTGCATTATAATTGCCATGTGCTG
ATTTGCTATGTGCCCCAGATGATGGCAAGATAAGGTAGGGTCAGGACCAT
CTAATTGCTCATGATCTACTACCAAAGGAAAGAAACATGGTCACAGAACA
CAGGTCATAATGAAGAAACAATAAAGGCATAAGAAATAGATTCATGTGTC
TTAAATTTTTACAAACTATTAAAAGGATGGACCATCTAGAGACTGCCATA
CCTGGGGATCCATCCCATAATCAGCCTCCAAACGGTGACGCCATTGCATA
CACTAGCAGGATTTTGCTGAAAGGACCCTGATATACCTCTCTTGTGAGGC
AATGCTGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTG
GATGGATCACAGGGCCCCCAATGTAGGAGCTAGACAAAGTACCCAAGGAG
CTAAAGAGATCTGCTACCCTATATGTGGAACAACAATATGAACTAACCAC
TACCCTCCCCCCCCCTCCGGAGCTCAAGTCCTTAGCTGCATATGTATCAC
ACCATGTTCTAATTTGTCATCACCGTAAAGAACCCCCTTGGCCCTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_c02.b1 MSMg01no081_c02.b1 CHROMAT_FILE:
MSMg01no081_c02.b1 PHD_FILE: MSMg01no081_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:14 2005
         (363 letters)



>mm_chr2_84897334_84898096
          Length = 763

 Score =  656 bits (339), Expect = 0.0
 Identities = 357/363 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaaagcagagtggaacagtgcaggagaaccagaagcctggtgccacctctgtctcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagaaagcagagtggaacagtgcaggagaaccagaagcctggtgccacctctgtctcctt 260

                                                                       
Query: 61  cctttccctgatgtcatctcctctctctgttcccagtaaccacagcagatttttcttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttccctgatgtcatctcctctctctgttcccagtaaccacagcagatttttcttttt 320

                                                                       
Query: 121 cttttataccgggggcccatatgcataaatcttatttaatctttatctaactctgacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttataccgggggcccatatgcataaatcttatttaatctttatctaactctgacata 380

                                                                       
Query: 181 gacgttggtgtcagtcctaaagtacaggtgtgaacccgaggaccgaagagatcccgtgga 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacgttggtatcagtcctaaagtacaggtgtgaacccgaggaccgaagagatcccgtgga 440

                                                                       
Query: 241 aatgagatgttctacttataggaggcagtccaaggattgctagaagccatgtgcctttca 300
           |||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 441 aatgagatgttcaacttataggagacagtccaaggattgctagaagccacgtgcctttca 500

                                                                       
Query: 301 ggactccccttattctttgcttgaatccatagcctccgtgctctcttgggtagtactgag 360
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 501 ggactccccttattctttgcttgaatccacagcctccgtgctcccttgggtagtactgag 560

              
Query: 361 acc 363
           |||
Sbjct: 561 acc 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no081_c02.g1 MSMg01no081_c02.g1 CHROMAT_FILE:
MSMg01no081_c02.g1 PHD_FILE: MSMg01no081_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:14 2005
         (377 letters)



>mm_chr2_85017838_85018614
          Length = 777

 Score =  706 bits (365), Expect = 0.0
 Identities = 374/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactcaataccagatttttattctccacaccaagtccataccttctgattccaacaatgt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 452 aactcaataccagatttttattctccacaccaagtccataccatctgattccaacaatgt 393

                                                                       
Query: 61  gcattataattgccatgtgctgatttgctatgtgccccagatgatggcaagataaggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gcattataattgccatgtgctgatttgctatgtgccccagatgatggcaagataaggtag 333

                                                                       
Query: 121 ggtcaggaccatctaattgctcatgatctactaccaaaggaaagaaacatggtcacagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggtcaggaccatctaattgctcatgatctactaccaaaggaaagaaacatggtcacagaa 273

                                                                       
Query: 181 cacaggtcataatgaagaaacaataaaggcataagaaatagattcatgtgtcttaaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cacaggtcataatgaagaaacaataaaggcataagaaatagattcatgtgtcttaaattt 213

                                                                       
Query: 241 ttacaaactattaaaaggatggaccatctagagactgccatacctggggatccatcccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ttacaaactattaaaaggatggaccatctagagactgccatacctggggatccatcccat 153

                                                                       
Query: 301 aatcagcctccaaacggtgacgccattgcatacactagcaggattttgctgaaaggaccc 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tatcagcctccaaacggtgacgccattgcatacactagcaggattttgctgaaaggaccc 93

                            
Query: 361 tgatatacctctcttgt 377
           ||||||| |||||||||
Sbjct: 92  tgatatagctctcttgt 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)