BAC Information

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BAC

Clone NameMSMg01-081E11
Chromosome2 (Build37)
Map Location 135,130,843 - 135,131,208
singlet/doubletsinglet
Overlap genePlcb1
Upstream geneHao1, Txndc13, LOC627897, LOC433478
Downstream geneLOC100043487, LOC100043786, LOC100043788, Plcb4, 6330527O06Rik, Pak7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081E11.T7 (MSMg01no081_e11.b1)MSMg01-081E11.TJ (MSMg01no081_e11.g1)
ACCAG301918AG301919
length675672
length of high quality
(start - end)
478 (42 - 519)366 (75 - 440)
definitionCHROMAT_FILE: MSMg01no081_e11.b1 PHD_FILE: MSMg01no081_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:26 2005CHROMAT_FILE: MSMg01no081_e11.g1 PHD_FILE: MSMg01no081_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAGAGGATCCGCGG
AATTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTACATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAATGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTACTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGTACAAGCCATTACTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
TTGTCTTTCTTCCACTGGATGGTTTTAGCTCCTTTGTCGAAGATCAAGTG
ACCCTAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTTTATTCCATTGGC
CCACTTGTCTGTCTCTATACCAGCACCATGCAGCTTTTATCTCAACTGCC
CTGTATTAAAGCTTTATGTCATGCT
TCGATGCACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGACTAACACAGCATCATCCCTAGAC
TGGGATGGGGGGAAACTGGAGTTGAGCAATGCTCTAAATTCATCCTTCTA
TTCTGATTGTGGTTGCCATGTGACCGGCTGCCTCAAGGTCCCATAACTCG
GACTTCTGCCCTTGATCTGTGCTTCTTTAAGTTGTTTTTGCCAGAGGATA
TTTTTTACAGCCACAGGAAACTTAGACAGTTGTGTGAGGGTTGTGAAAGA
TGTATTACTAATGACACCAATGTTATCATATAATGTTTACATAGTCGGTA
CTTTGTTAAGCTGCCTAATTTTCTGATGTGTAACCCTTTCATTGTCTTCT
TGTTATCTCAGCTGGCAAAACCTGGACAAGTTCTCTAGGGCACTCGGAGC
TTTCTCGCCCTTTTGTTATAAAAGTTATCCCATCCCTACCCTCCACCCCA
ATATGGTTTCTGACAAATATATTCTGTCTACCTCTTCATCTCCCTCCTTG
AGGGCCGCTGATGAGATTTACAGCTTGCTCGTCCATACCTCTGAGGTATT
GTTGCTTTAAACTCTAATAAATTTGTCCTCATGCTTTCTTCTGAGTCCAT
TCTGTTATTAACATGACCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_e11.g1 MSMg01no081_e11.g1 CHROMAT_FILE:
MSMg01no081_e11.g1 PHD_FILE: MSMg01no081_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:26 2005
         (366 letters)



>mm_chr2_135130501_135131266
          Length = 766

 Score =  669 bits (346), Expect = 0.0
 Identities = 361/366 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgactaacacagcatcatccctagactgggatggggggaaactggagttgagcaatgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 708 tgactaacacagcatcatccctagactgggatggggggaaactggagctgagcaatgctc 649

                                                                       
Query: 61  taaattcatccttctattctgattgtggttgccatgtgaccggctgcctcaaggtcccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 taaattcatccttctattctgattgtggttgccatgtgaccggctgcctcaaggtcccat 589

                                                                       
Query: 121 aactcggacttctgcccttgatctgtgcttctttaagttgtttttgccagaggatatttt 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 588 aactcggacttctgcccttgatctgtgctcctttaagttgtttttgccagaggatatttt 529

                                                                       
Query: 181 ttacagccacaggaaacttagacagttgtgtgagggttgtgaaagatgtattactaatga 240
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 528 ttacagccacagtaaacttagacaattgtgtgagggttgtgaaagatgtattactaatga 469

                                                                       
Query: 241 caccaatgttatcatataatgtttacatagtcggtactttgttaagctgcctaattttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caccaatgttatcatataatgtttacatagtcggtactttgttaagctgcctaattttct 409

                                                                       
Query: 301 gatgtgtaaccctttcattgtcttcttgttatctcagctggcaaaacctggacaagttct 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 408 gatgtgtaaccctttcattgtcttcttgttatctcagttggcaaaacctggacaagttct 349

                 
Query: 361 ctaggg 366
           ||||||
Sbjct: 348 ctaggg 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)