BAC Information

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BAC

Clone NameMSMg01-081J24
Chromosome2 (Build37)
Map Location 44,474,878 - 44,475,181
singlet/doubletsinglet
Overlap geneGtdc1
Upstream geneKynu, Arhgap15
Downstream geneZeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081J24.T7 (MSMg01no081_j24.b1)MSMg01-081J24.TJ (MSMg01no081_j24.g1)
ACCAG302184AG302185
length735730
length of high quality
(start - end)
446 (72 - 517)304 (74 - 377)
definitionCHROMAT_FILE: MSMg01no081_j24.b1 PHD_FILE: MSMg01no081_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:53 2005CHROMAT_FILE: MSMg01no081_j24.g1 PHD_FILE: MSMg01no081_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGA
ATTCAATGAATGTCATGCACAGCATACTCAAACTTATAGGACACAATAAA
AATTATTTCAAGAGGCAAGTTCGTATCACAAAGTGCTTGCAATGAAAAAT
TGGGAGAGATCCTGTACTATTAGCAACTTAATAGTACGTGTGAAAGCTCC
AATACAAAGAGAAGAAAGCACCCACAGTAGAGGCCAGCAATAGTCAAACT
CAGGGCTAAAATCAAAGAAATAGAAACAAAGAAAACAATACAAAAAAAAA
AATCAATGAAACAGAGAGTTGGTTCTTTGAGAAAATCAATAAGATTGACA
GACCCTCATACAAATTAACTTAAAAGGGGGAGAGAGAATATCCAAATTAA
TAAAATCATAATTAGAAAGGGAGATAAAACAACAGACTCTAAGGAAATCC
AAAGAATCGTATGGAGAACTTTGTTTTCCTCCCTCCCATGGCCCTTAGAC
TGTCCCCATTCCTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TATATATATATGCATATATATATATATATATACATACACTCATATACAAA
CACATTCCTTCAATTTCTAATTCTCCTCCTTCTGAATAATTGTTGCTTAA
AAAATAACTGAACCCATACTCTATTATACTCCCCATACCACCGCGTGCAC
TCCAACAACCCCTTATCCCTCATATTCATACTTTA
NCAATGCAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTCAGGTTAATTGTTAAGTTGGG
CCACTCAGTGAACTGACACAAGCTAGGAAACTTACAGAGGACTGCTCCAT
GGAGCTGTGACTTCCATCCTTATGGCATTGCTGCCATGGATTCTGTTCCT
TCCATCCTGCTGTTCACATTCATGGACACAATGAGCAGGTCTTAACATGT
TGATATTTGAAAGACTGTGAGGAATGGGAGGGAGAGCCAGTCCTTGTGAC
ATAAGCCTATAATCCTAGCTAATCAATGAGCTAAGAAGAATGGAGGGCAC
TAGAAAAGATCATATTGAATGAGGTAACCCAGACCCAGAAAGACAAATAT
CACACATTCTCTGCCATTATAGGCTCTGAGTCCCAGTCCTACAGTGACTA
TGTATCCTGGAGTGTATCCTGCAGTCACTGTAAACATCCAGAAAGGAAAC
AAGGTCCATTGCTGAAATACGATGTCAGGGCACAATACCGAGAATATTAT
CATGATAGAAGTGATCTGATCAAGGAAATGCCAAAAAAATATGCCCTATT
TAAGAAGATAAAAGATGAGTTAAAGTAATATGAACAAATAAAAAATTTCA
CAACAATTACAAACTACCTTTTTAAAACATTCTGTGTATAAAAACACAAA
ATAATACTTATACTAAATCTTCCTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_j24.g1 MSMg01no081_j24.g1 CHROMAT_FILE:
MSMg01no081_j24.g1 PHD_FILE: MSMg01no081_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:53 2005
         (304 letters)



>mm_chr2_44474717_44475420
          Length = 704

 Score =  580 bits (300), Expect = e-170
 Identities = 303/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacctcaggttaattgttaagttgggccactcagtgaactgacacaagctaggaaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tcacctcaggttaattgttaagttgggccactcagtgaactgacacaagctaggaaactt 406

                                                                       
Query: 61  acagaggactgctccatggagctgtgacttccatccttatggcattgctgccatggattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 acagaggactgctccatggagctgtgacttccatccttatggcattgctgccatggattc 346

                                                                       
Query: 121 tgttccttccatcctgctgttcacattcatggacacaatgagcaggtcttaacatgttga 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 345 tgttccttccatcctgctgttcacatgcatggacacaatgagcaggtcttaacatgttga 286

                                                                       
Query: 181 tatttgaaagactgtgaggaatgggagggagagccagtccttgtgacataagcctataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tatttgaaagactgtgaggaatgggagggagagccagtccttgtgacataagcctataat 226

                                                                       
Query: 241 cctagctaatcaatgagctaagaagaatggagggcactagaaaagatcatattgaatgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cctagctaatcaatgagctaagaagaatggagggcactagaaaagatcatattgaatgag 166

               
Query: 301 gtaa 304
           ||||
Sbjct: 165 gtaa 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)