Query= MSMg01no081_k23.b1 MSMg01no081_k23.b1 CHROMAT_FILE:
MSMg01no081_k23.b1 PHD_FILE: MSMg01no081_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:58 2005
(572 letters)
>mm_chr8_66516324_66517295
Length = 972
Score = 574 bits (297), Expect = e-168
Identities = 309/313 (98%)
Strand = Plus / Plus
Query: 1 tttgatatctataagtaaatgtgatcaagaaaatttttattctcaacactactaactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tttgatatctataagtaaatgtgatcaagaaaatttttattctcaacactactaattgaa 260
Query: 61 tagctttctattaagcccatttggtgtcaacagatcattgtgtcaatcagcaccttggac 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tagctttctattaagcccatttggtgtcaacggatcattgtgtcaatcagcaccttggac 320
Query: 121 aggagtaaaacactaagctgccctagaacagagccatgctgtcatctcagcatctaacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagtaaaacactaagctgccctagaacagagccatgctgtcatctcagcatctaacat 380
Query: 181 ccttcatctgagtaactgagacagttctggaatgcagatgtatatgcagcagagcactta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ccttcatctgagtaactgagacagttctggaatgcagatgtatatgcagcagagtactta 440
Query: 241 tacattaaataactaatatttataagaagagttatagattgcataaattaatattcttca 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacattaaataactaaaatttataagaagagttatagattgcataaattaatattcttca 500
Query: 301 aaccacaaggcaa 313
|||||||||||||
Sbjct: 501 aaccacaaggcaa 513
Score = 323 bits (167), Expect = 2e-92
Identities = 170/171 (99%), Gaps = 1/171 (0%)
Strand = Plus / Minus
Query: 313 attctctttgagctgctatattttatattcttcatagaatagaggcagcctcactcttaa 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 attctctttgagctgctatattttatattcttcatagaatagaggcagcctcactcttaa 113
Query: 373 aagatatttcattggacataga-ttttttttgtaccttttcaatatttccccattgtttt 431
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 112 aagatatttcattggacatagatttttttttgtaccttttcaatatttccccattgtttt 53
Query: 432 ctggatattatagtttttattattttgttgaaggatatgtcgttaatcttg 482
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 ctggatattatagtttttattattttgttgaaggatatgtcgttaatcttg 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_k23.g1 MSMg01no081_k23.g1 CHROMAT_FILE:
MSMg01no081_k23.g1 PHD_FILE: MSMg01no081_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:58 2005
(482 letters)
>mm_chr2_56120010_56120891
Length = 882
Score = 847 bits (438), Expect = 0.0
Identities = 471/484 (97%), Gaps = 5/484 (1%)
Strand = Plus / Plus
Query: 1 aaggattctagcggtttttattttctataaggccataaattgagcattgcttcaataata 60
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 aaggattctagcagtttttattttctataaggtcataaattgagcattgcttcaataata 260
Query: 61 attgagattaaatattatattctatcttccttttcctttttctctaaacattaagatcta 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaagattaaatattatattctatcttccttttcctttttctctaaacattaagatcta 320
Query: 121 ttgattcttgtattagattgatgtgtgccgggcatttatctttaggtttcatgtactcta 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ttgattcttgtattagattgatgtgtgccggacatttatctttaggtttcatgtactcta 380
Query: 181 ctgctccctatttctctctccccctgcacccccttttctcaaaacatttcctgattagta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ctgctccctatttctctctccccctgcacccccttttctcaaaacatttcctgattagaa 440
Query: 241 tttccctctcacaactactccaagtttctccctaccttcccccatctatatccatg--tt 298
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 441 tttccctctcacaactactccaagtctctccctaccttcccccatctatatccatgggtt 500
Query: 299 tttttttgtctctctttagaaaaaaaataggcttctaaaggataatacaatatggtataa 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttt---gtctctctttagaaaaaaaataggcttctaaaggataatacaatatggtataa 557
Query: 359 ttaatataatatgataaaataaaaactaacattgaaagagaacaaaacaaacagtaggaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttaatataatatgataaaataaaaactaacattgaaagagaacaaaacaaacagtaggaa 617
Query: 419 tggcaccactaaaaggttaaaaaaacaaaaacagcaaaaaaaattcaaacaaacaaatct 478
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 618 tggcaccgctaaaaggttaaaaaaacaaaaacagcaataaaaattcaaacaaacaaatct 677
Query: 479 taga 482
||||
Sbjct: 678 taga 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
