BAC Information

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BAC

Clone NameMSMg01-081M10
Chromosome2 (Build37)
Map Location 47,604,373 - 47,604,768
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081M10.T7 (MSMg01no081_m10.b1)MSMg01-081M10.TJ (MSMg01no081_m10.g1)
ACCAG302300AG302301
length699698
length of high quality
(start - end)
401 (42 - 442)423 (70 - 492)
definitionCHROMAT_FILE: MSMg01no081_m10.b1 PHD_FILE: MSMg01no081_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:05 2005CHROMAT_FILE: MSMg01no081_m10.g1 PHD_FILE: MSMg01no081_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGCTTCCTTTATCTGCTTTCTATTGGAGCAGGTATCACTGGCTCCCA
TTGCCATGAGATCAATCACTAGTATAAATTCCCTATAATGTGGACCATAG
TTTTTTAACATGTGAGTCAAAACAGATTCCTCCTCCTTTAAATTGGTTCT
CCAAGATATTCTGTTAAGGAAATAGAAGAGATAAAACAATTTCCTCATGT
GTTTATATCAGCTGTTAAACATAACCCACTCTTCTCACTACTCAGGCCTT
CATTCACTCTCCCGTTTCTTCAGAGTAATTCCTTTTCTCTTCTCATATTT
TCTCAGGTTCCTTTTACAAGGCTCTATATATGTGATTTTTTTGGAGCCTA
GGTTACTGAAAGTATTAATCTCTGGTACCATTATTTGCTTGCAACTGATG
GATGAATAAAATATTGCATAAGTTTGTGCACACCTGTACAGAGAAACATC
ATACTTTCTATATCCATCTATTGATAGGCACCTAGATTGGTCCCCACTGT
TGACCATTGTGAAAATCATCTACAGAAAAGTGTGTATGCTGGTACCGCTG
TGGAGTTCTGACTTCGTGCACTCGAATCATTTTCTACGGTATTGCCCATC
TCAACTACATATTCATATGTAATCCTAATAGCAACCACCATATTGTTTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTGATCCACTTAGATTTGACCTTAGTACAA
GGAGATATGAATGGATCAATTCACATTCTTCTACATGATAACCACCAGTT
GTGCCAGCACCATTTGTTGAACATGCTCTCTTTTCTCCACTGGTTGATTT
CAGCACCCTTGTCAAAGAACAAGTGACCATAGGTGTGTGGGTTCATTTCT
GGGTCTTCAATTCTATTCCATTTGTCGACTTGGCTGTCGCTATACCAGTA
CCATGCAGTTTTTATCACTTTTGCTCTGTAGTACAGCTTTAGGTCAGGCA
TGTTGATTCCACCAGAGGTTCTTTTATCATTGAGAAGAGTTTTTGCTATC
TTATGTGTACTGGCTGGTTTTGTGTGTCAACTTGACACAGCTGGAGTTAT
CTCAGAGAAAGGAGATTCAGTTGAAGAAATGCCTCCATGAGATCCAACTG
TAAGGCATTTTCTCAATTAGTGATCAAGGGGGAATGGCCCCTTGTGGATG
GCACCATCTCTGGGTTGGTAATTTTGGTTCTAACAGAGAGCAGGCTGAGC
AAGCCTGGGTAATCAAGCCAGTAAAGAACATCCCTCCATGACCTCTGCCT
CAGTTCCTGCTTTCTGACCTGCTTGAGATCCAGTCACGACTTTCTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_m10.b1 MSMg01no081_m10.b1 CHROMAT_FILE:
MSMg01no081_m10.b1 PHD_FILE: MSMg01no081_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:05 2005
         (401 letters)



>mm_chr2_47603984_47604783
          Length = 800

 Score =  729 bits (377), Expect = 0.0
 Identities = 392/397 (98%), Gaps = 1/397 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgcttcctttatctgctttctattggagcaggtatcactggctcccattgcc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gaattctctgcttcttttatctgctttctattggagcaggtatcactggctcccattgcc 726

                                                                       
Query: 65  atgagatcaatcactagtataaattccctataatgtggaccatagttttttaacatgtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 atgagatcaatcactagtataaattccctataatgtggaccatagttttttaacatgtga 666

                                                                       
Query: 125 gtcaaaacagattcctcctcctttaaattggttctccaagatattctgttaaggaaatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gtcaaaacagattcctcctcctttaaattggttctccaagatattctgttaaggaaatag 606

                                                                       
Query: 185 aagagataaaacaatttcctcatgtgtttatatcagctgttaaacataacccactcttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aagagataaaacaatttcctcatgtgtttatatcagctgttaaacataacccactcttct 546

                                                                       
Query: 245 cactactcaggccttcattcactctcccgtttcttcagagtaattccttttctcttctca 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 545 cactactcaggccttcattcactctcccgtttcttcaaagtaattccttttctcttctca 486

                                                                       
Query: 305 tattttctcaggttccttttacaaggctctatatatgtgatttttttggagcctaggtta 364
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 485 tattttctcaggttccttttacaaggctctatatatgtga-ttttttggagcctaggcta 427

                                                
Query: 365 ctgaaagtattaatctctggtaccattatttgcttgc 401
           || ||||||||||||||||||||||||||||||||||
Sbjct: 426 ctcaaagtattaatctctggtaccattatttgcttgc 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 800
Length adjustment: 9
Effective length of query: 392
Effective length of database: 791
Effective search space:   310072
Effective search space used:   310072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)