BAC Information

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BAC

Clone NameMSMg01-081M16
Chromosome2 (Build37)
Map Location 143,276,646 - 143,435,334
singlet/doubletdoublet
Overlap geneLOC668915, LOC668916, Pcsk2
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081M16.T7 (MSMg01no081_m16.b1)MSMg01-081M16.TJ (MSMg01no081_m16.g1)
ACCAG302312AG302313
length706704
length of high quality
(start - end)
348 (60 - 407)485 (65 - 549)
definitionCHROMAT_FILE: MSMg01no081_m16.b1 PHD_FILE: MSMg01no081_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:06 2005CHROMAT_FILE: MSMg01no081_m16.g1 PHD_FILE: MSMg01no081_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,434,987 - 143,435,334)(143,276,646 - 143,277,130)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAC
TTCTGACTCTTAAGCAGCAGGGATGGATAACAGGACTGAGGGCATAATGA
ATCCAGATGTGCCCATAGTTGAGCATTTCCTCAGAGGTTTGGCCCAAATG
TTACTGCTTTCCTGGGATCTTCTGTCTACTTTTGTCTGTAGGAGGAAGCT
CAAACTACAGTCGCCTCAAGAACCATGGAGAGATTCACAGCTCATATACG
CATCCCCCAAACAAGGGATGACAGGGGAAACAGCAGATAACTTCTGTAGA
GCCAGATGGCCATGAAGGTAATTAAGATGTGGCCTATGGGAAATCAAGGT
TTGAATTCATTAAAGGCATTGCCAGTTATGTGCAGTGTATTACAGTTAGC
ACAACACAGGGTAGTTGGAGATTAAGTGAGCCCCATTGGTTCACAAGTAG
TCAGGAGTTGTATGGATAGGAACACGAGTGTAATTGCCAAAGACCTCTTT
GCCTGTTAGATACATATACTCCTCTCTGTAGTAAATGGCACCCATGTAGA
ATGATTCTGTATTTGAACGGTATCGCACAGAACACAGGAGACTGATAGAG
ACTTGTAAATTCCCCAGCCCTGACATCTGGTGTTGATTAGTATGGATATG
ATATGGTGGTATGTTTGAAACATCCTGTATGATATGTCGCCCTTCCAATC
ATTTTA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTGGGAGATGATCAATTTAGAAGAGCAGCTTCTCCC
AGCTGCCCCACCCCCTGTATCCAACTCAGGGCTAACCAGGACATGGCTGG
AATGACTGTATTTATACATCTGTAACTCCCATCAACACAGGAAATAAACA
AACCTTATTATGGGTTGATGGGCTGTTGTGTTTCTCTCAGGTAAGCCAAT
GGCAATATAAAATTATGCTTTTGTTTGAAGTTAATTTCTAGTTGGCTGAA
TTTATGCTGCCTTTGAAACCTCCTGGTGCTTTGAATACAGCCAGCCTGCC
TCTTCAACCTTTGTTTTCCTCTAGCCCCGAGAAGGGATACCTAGACTGTG
GATTTAAAACTATGCAGCAGAAGCTTGTGTGTGCCTCACTGATAATGTTC
TTACTAATCCACCTCTGGCTGATCTCTCCAGGCAGATGCTGCCAGATATA
GCCTCGAGCCTGAAGCATCTTGTATACATATAGTCCAAAGCAAAGACAGG
GAGACTCAAAGCACAGTCCTGTCCCAGACTTCACCCCAGCTTGAAGCAGT
TTCCAGCACACTGTTTCCCTTGACAGTTCAGTGAAGTGTGTGCCAGGCTG
TATGGGGAACACTGTGTGTTCCTAGGTTGAAAAAAAAATATAGCAAGTTT
CTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_m16.b1 MSMg01no081_m16.b1 CHROMAT_FILE:
MSMg01no081_m16.b1 PHD_FILE: MSMg01no081_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:06 2005
         (348 letters)



>mm_chr2_143434787_143435534
          Length = 748

 Score =  650 bits (336), Expect = 0.0
 Identities = 345/348 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaagcagcagggatggataacaggactgagggcataatgaatccagatgtgcccatagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttaagcagcagggatggataacaggactgagggcataatgaatccagatgtgcccatagt 489

                                                                       
Query: 61  tgagcatttcctcagaggtttggcccaaatgttactgctttcctgggatcttctgtctac 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 488 tgagcatttcctcagaggtttggcccaaatgttactgctttcctggtatcttctgtctac 429

                                                                       
Query: 121 ttttgtctgtaggaggaagctcaaactacagtcgcctcaagaaccatggagagattcaca 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 428 ttttgtctgtaggaggaagctcaaactacagtcacctcaagaaccatggagagattcaca 369

                                                                       
Query: 181 gctcatatacgcatcccccaaacaagggatgacaggggaaacagcagataacttctgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gctcatatacgcatcccccaaacaagggatgacaggggaaacagcagataacttctgtag 309

                                                                       
Query: 241 agccagatggccatgaaggtaattaagatgtggcctatgggaaatcaaggtttgaattca 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 308 agccagatggccatgaaggtaattaagatgtggcctaggggaaatcaaggtttgaattca 249

                                                           
Query: 301 ttaaaggcattgccagttatgtgcagtgtattacagttagcacaacac 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttaaaggcattgccagttatgtgcagtgtattacagttagcacaacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no081_m16.g1 MSMg01no081_m16.g1 CHROMAT_FILE:
MSMg01no081_m16.g1 PHD_FILE: MSMg01no081_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:06 2005
         (485 letters)



>mm_chr2_143276446_143277330
          Length = 885

 Score =  907 bits (469), Expect = 0.0
 Identities = 481/485 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgggagatgatcaatttagaagagcagcttctcccagctgccccaccccctgtatccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggagatgatcaatttagaagagcagcttctcccagctgccccaccccctgtatccaa 260

                                                                       
Query: 61  ctcagggctaaccaggacatggctggaatgactgtatttatacatctgtaactcccatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagggctaaccaggacatggctggaatgactgtatttatacatctgtaactcccatca 320

                                                                       
Query: 121 acacaggaaataaacaaaccttattatgggttgatgggctgttgtgtttctctcaggtaa 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacaggagataaacaaaccttattatgggttgatgggctgttgtgtttctctcaggtaa 380

                                                                       
Query: 181 gccaatggcaatataaaattatgcttttgtttgaagttaatttctagttggctgaattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccaatggcaatataaaattatgcttttgtttgaagttaatttctagttggctgaattta 440

                                                                       
Query: 241 tgctgcctttgaaacctcctggtgctttgaatacagccagcctgcctcttcaacctttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctgcctttgaaacctcctggtgctttgaatacagccagcctgcctcttcaacctttgt 500

                                                                       
Query: 301 tttcctctagccccgagaagggatacctagactgtggatttaaaactatgcagcagaagc 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcctctagccctgagaagggatacctagactgtggatttaaaactatgcagcagaagc 560

                                                                       
Query: 361 ttgtgtgtgcctcactgataatgttcttactaatccacctctggctgatctctccaggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtgtgtgcctcactgataatgttcttactaatccacctctggctgatctctccaggca 620

                                                                       
Query: 421 gatgctgccagatatagcctcgagcctgaagcatcttgtatacatatagtccaaagcaaa 480
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 621 gatgctgccagatatagcctcgagcctgaagcatcttgtagacatagagtccaaagcaaa 680

                
Query: 481 gacag 485
           |||||
Sbjct: 681 gacag 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)