ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGGTACCTGATTCATGATCTAATTTGATCTGCTCCTGATGCACATTAA
AGTTTGGAAATCACTGCCCTGTGACCTCAAATCTTAGCTATAACAACGTT
TTTAAATGGACTTCTAGTTACTTGATTATACTGATTTACAAAACATAGAT
CGTATTCAGCTCTTATTCTTTTTTCTAGTATACTCATAGTCATATAATAA
TTTCTACCTTGTATGTTTATTAGCACATTTGAGGACTTATGTGTAAAAAT
CTGCACCATGTTTGTTTAATGATTTACTTTTAGATTAGAGTTTCATTCTT
TATGTTATTCTATGTTCTTATTGATTCCTATGTACCTAATACTATGCATA
TATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTG
CCCCCTCTTTTTCCTTCCTTTCCTCTCTCTTTCTTTTTCCCCATTCTCTC
TCACTCTTACTTTTTCTACTTCCACCTCAGTTTTTCTATTCTCCCCCTTT
GTTTGTTCTTTCTCTTTTCCCTCTCCTTTTTTTCTCCTCCACTTCTTTTT
TCTTTCTTCATTTCCCCCCTCTTCCTTCCTACCTTTTACCTCCCCCCCTT
TATTTCCCCCTCCCCTTCTTCCCATCTTTTTTCCTCTCCACGCTCCTCCC
CTC

TGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGCTTAGCTCTGTACCCCCAATTTTTAATT
GAGTTATTTGGATTTTTTGGAGGTTAACTTCTTGAGTTCTTTATATATTT
TGGATATCAGCCCTCTATTGGATATAGGGTTAATGAAGACTTTTCCCCCA
ATCTCTAGGTTACTGATTTGTTCTATTTAAGGTGGCTTTTGCCTTACAGA
AGCTTTCAGTTTCATGAGGTTCCATATATCAATTGTTGATCTTAGAGCCT
GAGTCATTTTGATCTGTTCAGGAAATTTCACCCTATGTCAATGAGGTCAA
GGCTCTTTCCCACTTTCTCTTCTATTAGATTCAGAGTATCTGGTTTTAGG
TAGAGGTCCTTGATCTACTTGGATTTGAGTTTTGTGCAAGCTTGTAAATA
TAAATCTATTTCCATGCTTCTATATAATGACTGCCAGTTAGAGAAACACC
AATTTTTGAACTTATTAAGATACTTTCTTTTTTCAACTGCATGTTTTTGC
CTTCTTTGTCAAATATAAAGTGTCCATTCATGTGTGGGTTTATTTCTGGG
TCTTCGATCTATTCAATTTATTGACCTGTCAGTCTCTGTACGAATACCAT
GCAGCCTTTATCACTATTGTTTTGTAGTACAGCTTGT

Query= MSMg01no081_o07.b1 MSMg01no081_o07.b1 CHROMAT_FILE:
MSMg01no081_o07.b1 PHD_FILE: MSMg01no081_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:14 2005
         (408 letters)



>mm_chr2_82165300_82166108
          Length = 809

 Score =  712 bits (368), Expect = 0.0
 Identities = 394/404 (97%), Gaps = 6/404 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggta--cctgattc-atgatctaatttgatctgctcctgatgcacattaaag 61
           ||||||||||||  |  ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaattcctggtaatc--gattcaatgatctaatttgatctgctcctgatgcacattaaag 578

                                                                       
Query: 62  tttggaaatcactgccctgtgacctcaaatcttagctataacaacgtttttaaatggact 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tttggaaatcactgccctgtgacctcaaatcttagctataacaacgtttttaaatggact 518

                                                                       
Query: 122 tc-tagttacttgattatactgatttacaaaacatagatcgtattcagctcttattcttt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tcttagttacttgattatactgatttacaaaacatagatcgtattcagctcttattcttt 458

                                                                       
Query: 181 tttctagtatactcatagtcatataataatttctaccttgtatgtttattagcacatttg 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tttctagtctactcatagtcatataataatttctaccttgtatgtttattagcacatttg 398

                                                                       
Query: 241 aggacttatgtgtaaaaatctgcaccatgtttgtttaatgatttacttttagattagagt 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aggacttatgtgaaaaaatctgcaccatgtttgtttaatgatttacttttagattagagt 338

                                                                       
Query: 301 ttcattctttatgttattctatgttcttattgattcctatgtacctaatactatgcatat 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttcattctttatgttattctgtgttcttattgattcctatgtacctaatactatgcatat 278

                                                       
Query: 361 atatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 404
           || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 234


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space:   319200
Effective search space used:   319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)