BAC Information

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BAC

Clone NameMSMg01-082E02
Chromosome2 (Build37)
Map Location 44,474,717 - 44,475,181
singlet/doubletsinglet
Overlap geneGtdc1
Upstream geneKynu, Arhgap15
Downstream geneZeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082E02.T7 (MSMg01no082_e02.b1)MSMg01-082E02.TJ (MSMg01no082_e02.g1)
ACCAG302667AG302668
length691689
length of high quality
(start - end)
101 (126 - 226)550 (76 - 625)
definitionCHROMAT_FILE: MSMg01no082_e02.b1 PHD_FILE: MSMg01no082_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:41 2005CHROMAT_FILE: MSMg01no082_e02.g1 PHD_FILE: MSMg01no082_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATCATXXXXXXXXXXXXXXXXXXXXXXXXXATTTCGAGCCCGAGCGCG
GNAATCAATGATTTCCTTAGGCAGCATACNCAAACTGATAGGACACAANA
AAAATTATTTCAAGAGTTTACCCCGTATCACAAAGTGCTTGCAATGAAAA
ATTGGGAGAGATCCTGTACTATTAGCAACTTAATAGTACGTGTGAAAGCT
CCAATACAAAGAGAAGAAAGCACCCATAGTAGAGGCTCAGCAATAGTCAA
ACTCATTTTTAAAATCAAAGAAATACAAACAAAGAAAACAATACAAAAAA
AAAAATCAATGAAACAGATATTTTTTTTTTTGAGAAAATCAATAAGATTG
ACAGACCCTCATATTTATTCACTTAAAAGGGGGAGAGAGAATATCCAAAT
TAATAAAATCATAATTAGAAAGGGAGATAAAACAACAGACTCTAAGGAAA
TCCAAAGAATCGTATGGAGAACTTTGTTTTCCTCCCTCCCATGGCCCTTA
GACTGTCCCCATTCCTAATTGCGTGTGTGTGTGTGCGTGTGTGTTTGTGT
GTGTATATATATATGTATATATATATATATATATATTCACGAAATCTACA
GGCTAATGGTATATTCTAGAAAAAAATCCTCCTGAGTGAATAATTTTATA
CTAGAAAGACATCTTTGTTGTGTAGTCACTTAAAAATGCTN
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTCAGGTTAATTGTTAAGTTG
GGCCACTCAGTGAACTGACACAAGCTAGGAAACTTACAGAGGACTGCTCC
ATGGAGCTGTGACTTCCATCCTTATGGCATTGCTGCCATGGATTCTGTTC
CTTCCATCCTGCTGTTCACATTCATGGACACAATGAGCAGGTCTTAACAT
GTTGATATTTGAAAGACTGTGAGGAATGGGAGGGAGAGCCAGTCCTTGTG
ACATAAGCCTATAATCCTAGCTAATCAATGAGCTAAGAAGAATGGAGGGC
ACTAGAAAAGATCATATTGAATGAGGTAACCCAGACCCAGAAAGACAAAT
ATCACACATTCTCTGCCATTAGAGGCTCTGAGTCCCAGTCCTACAGTGAC
TATGTATCCTGGAGTGTATCCTGGAGTCACTGTAAAATCCAGAAAGGAAA
CAAGGTCCATTGCTGGGATAGGAGGTCAGGGCACAATACAGAGAAGAATA
GCAAGATAGAAGTGATCTGATCAAGGAAATGGGAAAACAATAGGCCCTAA
TTAGGAAGAAAAAGGATGAGTTAAAGTAATAGTAAGAAATAAAAACTTCA
ACAACTATTACTAACTACCTTTTATAAACATTCTGTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_e02.g1 MSMg01no082_e02.g1 CHROMAT_FILE:
MSMg01no082_e02.g1 PHD_FILE: MSMg01no082_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:41 2005
         (550 letters)



>mm_chr2_44474717_44475666
          Length = 950

 Score =  779 bits (403), Expect = 0.0
 Identities = 437/465 (93%), Gaps = 26/465 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacctcaggttaattgttaagttgggccactcagtgaactgacacaagctaggaaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tcacctcaggttaattgttaagttgggccactcagtgaactgacacaagctaggaaactt 406

                                                                       
Query: 61  acagaggactgctccatggagctgtgacttccatccttatggcattgctgccatggattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 acagaggactgctccatggagctgtgacttccatccttatggcattgctgccatggattc 346

                                                                       
Query: 121 tgttccttccatcctgctgttcacattcatggacacaatgagcaggtcttaacatgttga 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 345 tgttccttccatcctgctgttcacatgcatggacacaatgagcaggtcttaacatgttga 286

                                                                       
Query: 181 tatttgaaagactgtgaggaatgggagggagagccagtccttgtgacataagcctataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tatttgaaagactgtgaggaatgggagggagagccagtccttgtgacataagcctataat 226

                                                                       
Query: 241 cctagctaatcaatgagctaagaagaatggagggcactagaaaagatcatattgaatgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cctagctaatcaatgagctaagaagaatggagggcactagaaaagatcatattgaatgag 166

                                                                       
Query: 301 gtaacccagacccagaaagacaaatatcacacattctctgccattagaggctctgagtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 165 gtaacccagacccagaaagacaaatatcacacattctctgccattagaggctctgagccc 106

                                                                       
Query: 361 cagtcctacagtgactatgtatcctggag--------------------------tgtat 394
           |||||||||||||||||||||||||||||                          |||||
Sbjct: 105 cagtcctacagtgactatgtatcctggagtgtatcctggagtcctatagtgactatgtat 46

                                                        
Query: 395 cctggagtcactgtaaaatccagaaaggaaacaaggtccattgct 439
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  cctggagtcactgtaaaatccagaaaggaaacaaggtccattgct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)