BAC Information

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BAC

Clone NameMSMg01-082G05
Chromosome2 (Build37)
Map Location 180,739,581 - 180,739,812
singlet/doubletsinglet
Overlap geneCol20a1
Upstream geneLsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1
Downstream geneChrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082G05.T7 (MSMg01no082_g05.b1)MSMg01-082G05.TJ (MSMg01no082_g05.g1)
ACCAG302769AG302770
length687686
length of high quality
(start - end)
83 (119 - 201)232 (75 - 306)
definitionCHROMAT_FILE: MSMg01no082_g05.b1 PHD_FILE: MSMg01no082_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:50 2005CHROMAT_FILE: MSMg01no082_g05.g1 PHD_FILE: MSMg01no082_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCACAGCGACCGCGGA
ATTCTTCCTTCTGCCAAGCTGACTATATCACAGTCCTCTGATAAATGGGA
GGTTGTGCACCCACCACACCACCCAGCAATTCCATTGCATGCTCTGTCTG
CTTCATGCACATACACAGAAGGTGTAGCTGAGGGTTTACAAACCTGTGCA
CCTGCGCACTTCCCGAGAACTCCCAATATGCCCTTGTGCCTCTTCTTAGC
CACGTGCAGTACAGCCAGGCAGTCACTGTCTGGATTTGTTTTGTTTTGCC
AGGGCCGCTTGCTTCTACAACGCCATTAAATTTGTGTTCTAGAACTTCAT
TAAATATGCCCAGCACAGTGTCCCAGAAAACCATCATGACGTGTGAGAAC
TCAACGCCTATTTCCCTCCCAAGTGCACAGCAGCCCTCTGACACTCAAGA
GCTGACTGGAACACATCACCAGCTGACGACCCTGCGACCATCTCCTCTAC
ACAATGTCCCCGTACGTGCCTGCGCCGACGTCCCCTCCCGTTCCCCCCTG
CTTGACCCTCCTGCCACTGAATCCCCCATGCCCCCAACGCCACAAGTCTT
GTCTTCTGACAACATCACTCCGCCCCACGCACCCTTATCCCTTGCTTCTT
CCCTGTACCTTTGCTCTTCTACACTCGCTTGCCCCCG
ATGAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAAGATAGTCATTAAGGTGAGGGAAAGC
CTTGTACGCCAAGCCTGAAATGTGGGCCATGGACACATGAGAGCTGGATG
ACAAGGTCAAACACAAGGTACATGTGTCAATGGCCATGCCTGCCTCAAAG
GACACTTCTCACAGCAAAGTGTGCAAGGAGGTTATACAGATGGAAACGTT
CTCAATATCACTGTCACTGAGAAAGTGGAAAACCATATTGAGATACCGCC
TTGTAGTCAGAAAGACAAATATCTACTGAGCGTTGGTGTAGAGAGGAGAG
CCTTGCACAGTGTTAGGAGGGTAAATTAGTATAGGCACTATGGGAATGAA
GGATCCTCACAAACACAAAAGAACTACCTAGATGGTGTGGTAAGTCCTCC
CCTGTGTACAAAGGAAATGAAATCAAACTTTTGTGATCACTGTTATTCCA
CTCACCAGAGGCTATAATTGTAGCCAATCAAGATGACCATTTACTTTTCG
ATGATAAATGATCCTAGGTTCTGAGGACGGAGAGTTACCCTTGCTCCTCT
TGTTAGGAACAGTTATTGTATGTTGAATGCTAAAACCCACTGAATTGTTA
ATACCATTGAAGGAAAGGCCAATAAGAATTTGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_g05.g1 MSMg01no082_g05.g1 CHROMAT_FILE:
MSMg01no082_g05.g1 PHD_FILE: MSMg01no082_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:50 2005
         (232 letters)



>mm_chr2_180739487_180740118
          Length = 632

 Score =  449 bits (232), Expect = e-131
 Identities = 232/232 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatagtcattaaggtgagggaaagccttgtacgccaagcctgaaatgtgggccatggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agatagtcattaaggtgagggaaagccttgtacgccaagcctgaaatgtgggccatggac 267

                                                                       
Query: 61  acatgagagctggatgacaaggtcaaacacaaggtacatgtgtcaatggccatgcctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acatgagagctggatgacaaggtcaaacacaaggtacatgtgtcaatggccatgcctgcc 207

                                                                       
Query: 121 tcaaaggacacttctcacagcaaagtgtgcaaggaggttatacagatggaaacgttctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tcaaaggacacttctcacagcaaagtgtgcaaggaggttatacagatggaaacgttctca 147

                                                               
Query: 181 atatcactgtcactgagaaagtggaaaaccatattgagataccgccttgtag 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 atatcactgtcactgagaaagtggaaaaccatattgagataccgccttgtag 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)